Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq114852 91.5 2e-13 seq182963 87.8 2e-12 >seq114852 Length=3422 Score = 91.5 bits (100), Expect = 2e-13 Identities = 566/897 (63%), Gaps = 21/897 (2%) Strand=Plus/Minus Query 112101 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 112160 ||| | ||||| |||||||| || ||||| | ||||| | | || ||||||| || Sbjct 2096 GCTTTATGGATACCAGATCTTTTTATGAAACGTGTTGAAGCTAATGAAGATTGGTCGCTG 2037 Query 112161 TTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTC 112220 | || || ||||| || ||||| || | |||||| ||||| ||| | Sbjct 2036 ATGTGCCCTCACAAGTGTCCTGGTCTGCATGAGGTATGGGGTGATGAGTTCGAACAATTA 1977 Query 112221 TACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGG 112280 || || || || ||| |||| | || || | | ||| ||| ||| | | ||| Sbjct 1976 TATACTAAATATGAGCAAGAGGGACGCGCTAATAAGACAGTGAAAGCACAAAGTCTTTGG 1917 Query 112281 AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCC 112340 |||||| | | || ||| ||||| || |||||||| ||||| ||||| || || Sbjct 1916 TTTGCTATTATTGAATCGCAAGTAGAGACCGGCACACCATACATGCTGTACAAGGATGCA 1857 Query 112341 TGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACA 112400 ||||| | |||||||||||| | ||| | || || || || || | || ||| Sbjct 1856 TGTAATCGGAAGAGTAATCAACAAAATGTTGGCACCATTAAATGTAGTAATTTATGCACA 1797 Query 112401 GAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCT 112460 ||||| | || | | ||| ||||| ||||| ||||| | ||||| || || Sbjct 1796 GAAATTGTTGAGTATTCAGCACCGGATGAAGTAGCTGTTTGTAATTTAGCATCGATTGCG 1737 Query 112461 CTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAAC-TCCACGAAGT 112519 || | || ||| || || |||| ||| |||| | ||| | | | ||||| Sbjct 1736 CTAAATATGTTTGTTACACCCGA---AAAGTCATACGATT-TCAAACGCTTAAAAGAAGT 1681 Query 112520 TACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG- 112578 ||| || || || || || ||||| | | |||| || ||| ||| || ||| Sbjct 1680 TACCAAGACCGTAACGCGTAATCTAAATAAAATTATCGAAGTGAATCATTA-TCCATTGC 1622 Query 112579 -AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTC 112637 || | ||||| || | ||||| || || || ||| | || || |||||| | Sbjct 1621 CCGA-AACAAAGAAATCAAACTTCAGACATCGCCCCATCGGTATTGGCGTACAAGGTTTT 1563 Query 112638 GCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATC--- 112694 || |||| || || ||| || || ||| || ||| | || | | || Sbjct 1562 GCAGATGCTTTAATCCTTATGCGTTACCCATACGAGAGCGAGCAGGC---TGCACTCTTG 1506 Query 112695 AATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCA 112754 ||| | || || || |||||||| | | ||| | || || |||| || ||||| Sbjct 1505 AATCAACAAATTTTCGAAACAATGTACTATGGCGCATTGGAAGCTAGTTGTGAATTGGCT 1446 Query 112755 GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAA 112814 || ||||| | |||||||| | || || || || | | |||| | || ||| Sbjct 1445 GAAAAATATGGTACTTATGAAACATACGAAGGCTCACCTGTTAGCAAAGGTATACTCCAA 1386 Query 112815 TTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACGCTCTCAAGGAACG 112873 | |||||||| |||| | ||||| | || | |||||| | | || || Sbjct 1385 TATGATATGT-GGAATAAAAAACCAACCGATCTATGGGACTGGACTGTATTGAAAGAGAA 1327 Query 112874 CATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCC 112931 || ||| || | || | || ||| || || | ||||||| ||||| || || || Sbjct 1326 AATAAAGCAGCATGGCGTACGCAAC--TCCTTACTTTTGGCACCCATGCCTACTGCATCA 1269 Query 112932 ACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 || || ||||| |||| || ||||||| |||||||| || || | || || ||| Sbjct 1268 ACTGCTCAAATTATGGGCAACAATGAATCTTTTGAACCTTATACTTCAAATATTTAT 1212 >seq182963 Length=2454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 275/418 (66%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 15840 ATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCT 15899 |||| ||||| || |||||| ||| || | || | | ||| || |||||||| Sbjct 1979 ATCTGTTCGCGACCACGAACATCTGGCAGGCCAACAACAACTTGACGGTCGAAGCGACCC 2038 Query 15900 GGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATA 15959 || || | ||||| || || | ||| || || || || || || |||| || Sbjct 2039 GGACGCAATAGCGCCGGGTCCAGAACATCCGGACGGTTAGTCGCTGCAATAACAATGATG 2098 Query 15960 CCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCC 16016 ||| || ||| |||||||| ||||| || || | ||||| | || || || Sbjct 2099 CCT---TCATTACCTTCAAAACCGTCCATATCAACTAACATTTGGTTCAGTGTCTGCTCA 2155 Query 16017 CGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 16074 || ||||||| | | | | | ||| |||| ||||| || || ||||| || | Sbjct 2156 CGCTCATCATGACCACCGCCCAA--ACCTGCACCCCGTTGACGACCTACAGCATCGATTT 2213 Query 16075 CATCAATGAAGACGATGCATGGT--TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC 16132 ||||||| || | ||||||||| || |||| | | |||||| | ||| ||||| Sbjct 2214 CATCAATAAAAATGATGCATGGGGCTGCTTTTTTTGCCTG--TTCAAACATATCACGTAC 2271 Query 16133 ACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGA 16191 || || ||||||||||||||||| || ||||| | | ||||| || | | | Sbjct 2272 GCGAGATGCACCCACACCAACAAACATTTCGACAAAATCAGAACCGGAA-ATAGTAAAAA 2330 Query 16192 AGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || || |||| |||||| ||||| || || || || || || || ||||| || Sbjct 2331 AAGGCACTTTAGCTTCACCAGCAATAGCCTTTGCCAGCAGTGTTTTGCCTGTACCCGG 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619320162772400