Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq114852 100 3e-16 seq182963 87.8 2e-12 >seq114852 Length=3422 Score = 100 bits (110), Expect = 3e-16 Identities = 301/463 (65%), Gaps = 4/463 (1%) Strand=Plus/Plus Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || || || ||||| ||||| |||||||| |||||| ||| ||||| | |||| Sbjct 1735 AGCGCAATCGATGCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATT 1794 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 ||||| || || || || ||||| || || | ||| | ||| |||||||| || Sbjct 1795 TCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTA 1854 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || ||||||||||| |||||||| || || || ||||| || || | | ||| || Sbjct 1855 CATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCA 1914 Query 106640 TTCCACACATCGGCGGCTGGTACAATGGC--GTTGGCCCGTCCCTCCGCCTCGTACTTTG 106697 ||| | | ||| | || || | || || |||||||| ||| || || | Sbjct 1915 AACCAAAGACTTTGTGCT--TTCACTGTCTTATTAGCGCGTCCCTCTTGCTCATATTTAG 1972 Query 106698 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 106757 | || | ||| ||||| |||||| | || ||||| || ||||| || | Sbjct 1973 TATATAATTGTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGC 2032 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | || ||||| | || | ||||| || ||||| ||||| ||||| ||||| | Sbjct 2033 ACATCAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATA 2092 Query 106818 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 106877 | |||| | ||||||| ||| ||||| | || ||| ||| || | Sbjct 2093 AAGCATAAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCA 2152 Query 106878 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 ||||| | | ||| || |||||||| || | ||||| ||| Sbjct 2153 AAAACTCAAATACATCTGCATGCCATGGTTCTAAATAGATTGC 2195 >seq182963 Length=2454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 275/418 (66%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 9147 ATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCT 9206 |||| ||||| || |||||| ||| || | || | | ||| || |||||||| Sbjct 1979 ATCTGTTCGCGACCACGAACATCTGGCAGGCCAACAACAACTTGACGGTCGAAGCGACCC 2038 Query 9207 GGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATA 9266 ||||| | ||||| || || | ||| || || ||||| || || |||| || Sbjct 2039 GGACGCAATAGCGCCGGGTCCAGAACATCCGGACGGTTAGTCGCTGCAATAACAATGATG 2098 Query 9267 CCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCC 9323 ||| |||||| |||||||| ||||| || || | |||||| | || || || Sbjct 2099 CCT---TCATTACCTTCAAAACCGTCCATATCAACTAACATTTGGTTCAGTGTCTGCTCA 2155 Query 9324 CGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9381 || ||||||| | | | | | ||| |||| ||||| || || ||||| || | Sbjct 2156 CGCTCATCATGACCACCGCCCAA--ACCTGCACCCCGTTGACGACCTACAGCATCGATTT 2213 Query 9382 CATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAAC 9439 ||||||| || | || ||||| || |||| | | |||||| | ||| || || Sbjct 2214 CATCAATAAAAATGATGCATGGGGCTGCTTTTTTTGCCTG--TTCAAACATATCACGTAC 2271 Query 9440 CCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGA 9498 | || ||||||||||||||||| || ||||| | | ||||| || | | | Sbjct 2272 GCGAGATGCACCCACACCAACAAACATTTCGACAAAATCAGAACCGGAA-ATAGTAAAAA 2330 Query 9499 AGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || || |||| |||||| ||||| || || || || || || || ||||| || Sbjct 2331 AAGGCACTTTAGCTTCACCAGCAATAGCCTTTGCCAGCAGTGTTTTGCCTGTACCCGG 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588629043365800