Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq62029 100 3e-16 >seq62029 Length=5761 Score = 100 bits (110), Expect = 3e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 154864 TGTCATGTATTATGATTACATACCCATCTACACATGGT-GTATTTGAAACTAACATTAGA 154922 |||| ||| | ||||| || || |||||||| ||||| || || || | | | Sbjct 1435 TGTCGTGTTTGATGATCACTTATCCATCTAC-CATGGGCGTGTTCGAGGAGACGGTCGCA 1377 Query 154923 CAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 | ||||| || || | ||| | |||| || ||||| || | ||||| || || | Sbjct 1376 GATATATGCGAGCTCATACATAAACATGGCGGACAGGTGTACTTGGATGGCGCTAACATG 1317 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAAC 155042 ||||| || || || || ||| |||| |||||| ||||| | ||| | || Sbjct 1316 AATGCGCAAGTTGGGCTCTGCCGTCCAGGTGATTATGGTAGCGATGTGTCACATTTGAAT 1257 Query 155043 TTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGT 155102 |||| ||||| ||||||||||||||||| ||||| ||||||||| | || ||||| ||| Sbjct 1256 CTACACAAAACTTTCTGTATTCCACATGGTGGTGGTGGTCCTGGCATGGGGCCTATTGGT 1197 Query 155103 GT 155104 || Sbjct 1196 GT 1195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577885714872800