Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq183258 93.3 4e-14 seq183288 82.4 8e-11 >seq183258 Length=7175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 |||||| ||||||||| |||||||||| ||||||||||||| || ||||||||||||| Sbjct 2223 GGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTTGTCGCTGGTTCAAA 2282 Query 137290 TCCAGCCAGGGTCACCAA 137307 |||||| ||| |||||| Sbjct 2283 TCCAGCTGGGGCCACCAA 2300 >seq183288 Length=12247 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 11950 TGTAGTTCAGTAGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 12009 Query 137691 CATCGTCGCCAAATTGAA 137708 || | ||||| ||||| Sbjct 12010 CAGAGGAGCCAACTTGAA 12027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501315953432200