Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq114852 553 2e-152 seq66438 251 8e-62 >seq114852 Length=3422 Score = 553 bits (612), Expect = 2e-152 Identities = 1258/1893 (66%), Gaps = 50/1893 (3%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || ||||| | || | ||| |||| ||| || |||||||||||||| || Sbjct 825 TTTATCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATAATACATGCC 884 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | || |||| ||| | || || ||| || | ||| ||| | || Sbjct 885 AGTTTTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATGTAAGTTTGCCATAGTTTGG 944 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | ||||||||||| ||||| || |||||||||||||| || | ||| ||||| Sbjct 945 TTCAGCTACATGAATATTAAACGATTGGCTTTGATCAATAAATGCGCCACGATCGGCTGC 1004 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | || | || | ||||||||| || || || |||| || || | Sbjct 1005 CATCTTCATTGTAGTCTTTACCGATATCTCCCACACAGTCTTGTAAAGTTCACGTATTTT 1064 Query 47213 TTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 || || | | || | || ||| || || || | | ||||||||| |||| | Sbjct 1065 TTGCGGTATTGTTTCAATACCTTGTATTGAACCACGACTGGTTATAATTTTAGTTTTCAT 1124 Query 47270 ttcatttgaccaaagtt----ttcgttcagttaatgtttttaaAAGATGAGGATTAACAA 47325 ||||| ||| | |||| | || | || || | |||| ||||||||| Sbjct 1125 TTCATCATCCCACAAACCCAATTCGGTAAGATCGCGT----AACAAATGATGATTAACAA 1180 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 ||||||||| || |||||||| | ||| |||| ||||| ||||| ||||| | || Sbjct 1181 CTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAAGGTTCAAAAG 1240 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 ||||||| || || | |||||||||||||||||| |||||||||| ||| | | |||| Sbjct 1241 ATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCAAAAGTAAGG 1300 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 || | ||| |||| | | ||| | |||| ||||| ||||| | Sbjct 1301 AGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCCCATAGATCGG 1360 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| |||||| | ||||||||| || || ||||| || | || || || | | Sbjct 1361 TTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGTGAGCCTTCGT 1420 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 |||||| ||||| ||| ||| || ||| | ||||||||| ||||||||||| | ||| | Sbjct 1421 ATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAATGCGCCATAGT 1480 Query 47626 ATATTGTTTCAAATATTTTTATGTTT--AGATTCCTTGCTTCTGATGAT-TCAAAAGGAT 47682 | |||||||| || |||| | || || ||| | | || || | | || | || | Sbjct 1481 ACATTGTTTCGAAAATTTGT-TGATTCAAGAGTGCAGCCTGCTC--GCTCTCGTATGGGT 1537 Query 47683 ANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAG 47742 | || | |||||| || ||||| || |||||||| || || | ||| Sbjct 1538 AACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGGCGATGTC 1597 Query 47743 TTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTA 47802 | || || || | ||| || |||||||| | || | || ||||||||||||| Sbjct 1598 TGAAGTTTGATTTCTTTGTTTCGGGCAATGGATAATGATTCACTTCGATAATTTTATTTA 1657 Query 47803 GANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CTTGTTAT 47859 || || |||| |||| || ||||| | ||| | Sbjct 1658 GATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAATCGTATGACTTTTCGG 1717 Query 47860 TTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGAT 47919 | |||||||| |||| || || || ||||||| |||||| |||||||| |||| || Sbjct 1718 GTGTAACAAACATATTTAGCGCAATCGATGCTAAATTACAAACAGCTACTTCATCCGGTG 1777 Query 47920 TAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGAT 47979 | ||| | | ||||| | |||| ||||| |||||| || || || | |||||| | Sbjct 1778 CTGAATACTCAACAATTTCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTTGTT 1837 Query 47980 GATTAttnnnnttGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039 ||||| | |||||||| |||||||| ||||| | ||||| || || |||| | Sbjct 1838 GATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTT 1897 Query 48040 GAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCT---TTAT 48096 | |||||||| |||| ||||| | || |||| | ||| | || |||| Sbjct 1898 GCGATTCAATAATAG-----CAAAC---CAAAGACTTTGT----GCTTTCACTGTCTTAT 1945 Query 48097 TA---------TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACAT 48147 || || || || |||||||||||||| | || || ||||| || | || | Sbjct 1946 TAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAACTCATCACCCCATACCT 2005 Query 48148 TATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTC 48207 || | |||||||| | | ||| ||||||| |||||||| |||| | || || | Sbjct 2006 CATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTTCATTAGCTTCAACAC 2065 Query 48208 TAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTT 48267 ||||||| | |||||||||||| | ||| ||||||||| |||| | |||||| Sbjct 2066 GTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAATAAATCTCTAGCACGATGTTCTT 2125 Query 48268 CATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCT 48326 | |||||| | || | ||||| | ||| ||| || | || ||| ||||||||||||||| Sbjct 2126 CCTTGCCAGTGTTTTTCTTTAAATCCAA-AAACTCAAATACATCTGCATGCCATGGTTCT 2184 Query 48327 AAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTA 48386 ||||| ||||| | | || || |||||| ||| || ||||||| ||| | || | Sbjct 2185 AAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCCCTGATCTACATAACGTGCCACA 2244 Query 48387 TTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATA 48446 || || | ||||| |||||||| || | |||||| ||| | ||||| || || | ||| Sbjct 2245 TTATTGAATACTCTCAACATTGGTACCAAACCATTCGATGTGCCATTTGTACCGGCAATT 2304 Query 48447 TAACTTCCACTAGCTCTTATATTA-CTA-ATTGAAATACCTATACCACCTGCCATTTTAG 48504 | || ||||| | |||| | || |||| | || |||||||| || ||| | Sbjct 2305 GCCGTGCCTCTAGCGCGTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTGG 2362 Query 48505 ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATAT 48564 | |||| ||||| | | | | | || || || || ||| | | ||| Sbjct 2363 AAATTAATGCACATTGATGTGCTGAAGTGAATATGCCATCAATCGAATCGGCGACCATTG 2422 Query 48565 TTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAG 48624 | || ||||| ||| || | ||| || || | ||| | | | || | |||||| | Sbjct 2423 TCAAGAGAAAGCAAGATGATAGTTGTGGCTGCCTTGTTGCGGCAGCGAACAGTGTTGGTG 2482 Query 48625 ATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATAT 48684 | ||||| |||| | ||||| | || || |||||||| || | | |||||||| Sbjct 2483 AAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGTATGTTTCGATGGCTGCATCTATAT 2542 Query 48685 CCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTT 48744 || ||||||||| || | |||||||||||||||| || || | |||||||||| Sbjct 2543 CCTCGCCATGTATACCAATGGCAACACGCATTAACATATGCTGTGGACGCTCAACAATTT 2602 Query 48745 TGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATG 48804 || ||||| | | | | || || ||||| ||||||||||||||||| || || Sbjct 2603 TGCCATTTAATCTGAGTAAGTAAGAACGTTCCAGCGTTTTAAAACCAAAATAATTATAAC 2662 Query 48805 AAAAGTCGTTATCATTAATAATTGATGAATTTA 48837 |||||| ||||| ||||| | |||||||| Sbjct 2663 CAAAGTCACGATCATATATAATAGCTGAATTTA 2695 >seq66438 Length=2923 Score = 251 bits (278), Expect = 8e-62 Identities = 480/703 (68%), Gaps = 21/703 (3%) Strand=Plus/Plus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 |||||| ||||||| |||||| ||| | | ||||||||| || || || || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG--AT 18912 || | |||||||| | ||||||||||| || || || ||||| | || || || Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCAAT 1028 Query 18913 ACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCA 18972 | || || || | | || | || | ||||| ||||||| ||| ||||||||| Sbjct 1029 AATACGCTCCCTAC--TCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCA 1086 Query 18973 CAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGT 19032 ||||||| || || || | || | ||||| || ||||| || || ||||| || Sbjct 1087 CAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGA 1146 Query 19033 CCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACT 19092 || | |||||| ||||| || || |||||||| || ||||||||| ||||| || Sbjct 1147 CCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACG 1206 Query 19093 GCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAG 19151 || ||||| |||| | | ||| ||| || |||| | || | |||| |||||| || Sbjct 1207 GCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGC-TTTTGATGAGATCCATGCTAG 1265 Query 19152 TGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACAT 19211 ||||||||||||||| || || || || || || |||| |||||||| Sbjct 1266 TGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAATA------- 1318 Query 19212 ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAAT 19271 | | ||| |||| || | ||| || | | || |||||||||||||| | Sbjct 1319 ------NTTTCCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCAC 1372 Query 19272 ATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT 19331 |||||| || || || ||||| || ||||| || | |||||| || || |||||||| Sbjct 1373 ATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTG 1432 Query 19332 ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAA 19391 || || | ||| || | |||||||||||| || ||||| || || || || ||||| Sbjct 1433 ACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCTAA 1492 Query 19392 TACATGTTTAATAAAATGTTTTTCATCTGAGGTTA-ATGTATTCCAATCATTAATATCTT 19450 || ||| | ||||| ||||| ||| | | ||| |||||| | || |||| Sbjct 1493 AACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTA-CCCAATCGTCCATGTCTT 1551 Query 19451 TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 | || | ||| || ||||| || |||||||| || || || || Sbjct 1552 TGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGC 1594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560820903343800