Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq183044 477 2e-129 seq183288 95.1 2e-14 seq182810 89.7 9e-13 seq183258 86.0 1e-11 >seq183044 Length=3031 Score = 477 bits (528), Expect = 2e-129 Identities = 948/1388 (68%), Gaps = 32/1388 (2%) Strand=Plus/Plus Query 207565 GGTTACAGGTCTATCTCAATATCACCCTTGGGCTTTACA-CAACAAGGTAGGATCTCACC 207623 || || || || || |||||||| || ||| || | || ||||| |||| ||||| || Sbjct 767 GGCTATAGCTCGATTTCAATATCTCC-TTGTGCCCTGCAGCAACAGGGTAATATCTCGCC 825 Query 207624 TTTGTTAATGAATGCTAGTGGTT-CTCT-TATCCATGTCACTTCTCCTTTGAGAAGCTTG 207681 | | | || ||||| |||| | | ||| || ||||||||||||| || | | Sbjct 826 CTGTTGCACAAAGGCTAGCGGTTTCGCGCTAT--ATCTCACTTCTCCTTTCAGCAAACGG 883 Query 207682 CAACGACAAGAACCACAATAACCTTCACGACATTGGTACTCCACCTCTACCTGATTGGCC 207741 ||| || |||||||| |||||||| ||||| ||||| || || || |||| | Sbjct 884 GTACGGCATGAACCACAGTAACCTTCGCGACACTGGTATTCTACACAAACATGATGTAGC 943 Query 207742 TCTAGGGCAGCAAGTAAAGAAGGATGTTC-TCCTTTTACTTCAACTTCTTTATCTA---G 207797 || || ||| || |||||||| | || || | |||| | || | | | Sbjct 944 TCCAGTAAAGCTAGCAAAGAAGGGGGATCATCATGGTACTCGAGCTGCGCACCGGAAGTG 1003 Query 207798 CTTA----AATAGCTTGATCAGAC-----TCATTACAGTTGGAAATCACCGAACTCGGCA 207848 | || ||| | | || | || | |||| |||| || || | || || | Sbjct 1004 CGTAGTGTAATGG-TCGAATACACCATCGTAATTATAGTTCAAAGTCTCTGAGGTCATCG 1062 Query 207849 GTATCTACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGA 207908 | | ||||| || || ||||| || || || || || |||||| |||||||| || Sbjct 1063 GCACTGACTTCAGAATCAATCTGCCCGACTAGATAGGAGCTAACTTCAACTTCCTGTGGT 1122 Query 207909 GCAACCTGAACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTG 207968 ||||| || ||||| |||| |||||||| || || ||||| || || ||||| || || Sbjct 1123 GCAACTTGCACGTTATCAGACACCAGCCAAGAATTGATCCAAGGGATCGGGTTTGATCTG 1182 Query 207969 GTTTTGAATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACA 208028 || ||||| || ||||| | | | | ||| | ||| ||||| || || || ||||||| Sbjct 1183 GTCTTGAAGGGCAGATCAAGATCAACCGCATTCATGCGGATATTAGTGATATACTCAATG 1242 Query 208029 TACTGGCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCA 208088 ||||| || | || || ||||||||||| ||||| ||||| | | |||| ||| ||| Sbjct 1243 TACTGCCACAAAATATCCTTGTTCAGACCAATCATGGAACCGCCGCTAAACAAATATTCA 1302 Query 208089 GCCCACTCTTTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACAC 208148 |||||||||||||| ||||| || | ||| || | | ||| ||||||| || || Sbjct 1303 GCCCACTCTTTTTCCTGCTGCGCTGCCAAAACAAAGAGATTGTAACACTCTTGGCGGCAT 1362 Query 208149 TCTGCTGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATG 208208 ||| ||||| |||||||| ||| ||||||||| ||| | || ||| | ||| Sbjct 1363 TCTTTGGCAATTTCAGCCATTTCTAGATCATCTTCACCGCTACGTAACAAGTTTAAGATA 1422 Query 208209 TGCTGAGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCG 208268 |||||||| || || ||| | ||||||||||| || || | || ||||| ||||| Sbjct 1423 TGCTGAGTTCCGGTCAAGTGTAACGCTTCGTCACGAGCAATAAGCTTAATGATTTTAGCA 1482 Query 208269 TTACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAA 208328 ||||||||||||| | || || || || ||||| || || || || ||||| ||| Sbjct 1483 TTACCTTCCATCAATTCGCGCTCTGCGAAAGCGAAAGAACAGGCAAAACTCACGTAAAAA 1542 Query 208329 CGAATAGCTTCAAGTGAGTTGATAGATTGCAGAGCCAGGTACAGTGCT--TTCTTAATAG 208386 || || ||||| | | ||| | | | ||| || || | ||| || || | | Sbjct 1543 CGTATTGCTTCTAACGCATTG--ACACTCATGAGGCATATATAAAGCTGCTTTTTTAGCG 1600 Query 208387 CACGAAGATTAACATTAACCTTCTCGCCATTGACTACGTGGTCACCCAGACC---CAGGT 208443 | || | ||||| ||| | | || | ||| ||| |||| || ||| | Sbjct 1601 CCCGCAAGTTAACGGTAATAGTTTTACCGTCCACTTTGTGCACACCTTCTCCTAACAGAT 1660 Query 208444 AATAGTACTGGTTGATCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCAC 208503 | |||| | || ||| | || || | ||| |||||| || | | | |||| Sbjct 1661 ACCAGTA---GCTGGTCATTTCGATTAGATCGTCATAGTAACCAGAGATATCTTTGGCAC 1717 Query 208504 GTTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGA 208563 | ||| ||||||||| | || ||||| || || | | || || ||||||| Sbjct 1718 GCGAAAGGATTTGTTCGTTAGTGATAATATCATCGAAAACTAGTGCTGGGTCATTAACGA 1777 Query 208564 TGTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCT 208623 | || | || || || ||||| || ||||||||||||||||| ||||||| | Sbjct 1778 TATTACGTATAATATGCGTATAAGATCGGGAATGGATGGTTTCAGAGAATGCCCAGGTTT 1837 Query 208624 CAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCAC 208683 | |||| |||||||| || || |||||| | || || ||||| |||||||||| || Sbjct 1838 CCACCCAAGTTTCCAGTTCAGGAATAGAGATCAATGGTAGCAATGCTACGTTTGGACTAC 1897 Query 208684 GGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCT 208743 | || |||||||| |||| || || |||||||||| ||||||||||| | |||||| | Sbjct 1898 GTCCTTGGATAGAATCCAACAGAGTTTGATATTTCAAATTACTGATGAAAATGTGTTTTT 1957 Query 208744 CGTGATCTGGTAAAGCCATG-TAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGA 208802 | || | | | ||| | || || || || || ||||| || ||||| |||||||| || Sbjct 1958 CATG-TTTAGCCAAGGCTTGATAATCGATGCGATCACGTGATACATCAACTTCTTCTGGG 2016 Query 208803 CGCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGG 208862 |||||||| |||||||||||||| ||||| ||||| ||||| || |||| || |||||| Sbjct 2017 CGCCAGAAAAAAGAAAGTTGTTTTTCAATTAGTTTTTCAAAAATGCCATATTTTTGTTGG 2076 Query 208863 TCGTAACGAGAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTT 208922 || | || | || ||| || ||||| | ||||| |||| | ||||| ||| Sbjct 2077 TCAAAGCGTGCAATGTTAACCGGCTGACCGAAAAACATAGGTTCCATCAGCTGATCATTT 2136 Query 208923 TTGTTTTG 208930 || ||||| Sbjct 2137 TTATTTTG 2144 >seq183288 Length=12247 Score = 95.1 bits (104), Expect = 2e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 16835 TGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 16894 |||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 12011 TGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCTACTGAACTA 11952 Query 16895 CA 16896 || Sbjct 11951 CA 11950 >seq182810 Length=1907 Score = 89.7 bits (98), Expect = 9e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 16119 AATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTAT 16178 ||||| ||| |||||||||||||||||||||||| | ||||||||||| |||||||| Sbjct 1753 AATGGTGCGTCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTAT 1694 Query 16179 CC-ACTGAGCTAAG 16191 || ||||||||||| Sbjct 1693 CCAACTGAGCTAAG 1680 >seq183258 Length=7175 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 16040 TGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 16099 |||||||||| || || |||||| ||||| ||||||||||||||| | |||||||||| Sbjct 2299 TGGTGGCCCCAGCTGGATTTGAACCAGCGACAAAGCGATTATGAGTCGCGTGCTCTAACC 2240 Query 16100 GTCTGAGCTACGGGGCC 16116 |||||||| |||||| Sbjct 2239 AACTGAGCTATGGGGCC 2223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 909006911899400