Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq66438 196 6e-45 >seq66438 Length=2923 Score = 196 bits (216), Expect = 6e-45 Identities = 459/689 (67%), Gaps = 17/689 (2%) Strand=Plus/Plus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 |||||| |||||||| || || | ||||||| | | | || || ||||| | || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 ||| | |||||| | ||||| | || ||| ||| | || || || || || | || Sbjct 969 TGGCAAAGCATCTGTTAAGAATTC-TTGTTCAATTTTAACCGCCTCAGCAATGATTTCAA 1027 Query 37129 CAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCAC 37188 |||| || | | || | | |||| || |||| | ||| |||||||||| Sbjct 1028 TAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCAC 1087 Query 37189 AATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAAC 37248 |||||||||||||||| | || | ||||| || || || || || ||||||| || Sbjct 1088 AATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGAC 1147 Query 37249 CTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTG 37308 | | |||||| | |||||| || | |||||| || |||||| || |||||||| | Sbjct 1148 CACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACGG 1207 Query 37309 CTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA-GAAATCCAttttttt 37367 | |||||||| | | |||| ||| ||| | | | | | | || |||||| | | Sbjct 1208 CAGCAAATGCAATGACACGTTCACCAAAATTAGC-CGCTTTTGATGAGATCCATGCTAGT 1266 Query 37368 GTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttt 37427 | |||||| ||||| ||||| || |||||||| || || || | Sbjct 1267 GCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAATAN------- 1319 Query 37428 ttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATA 37487 |||| ||| | || || |||||||| || | ||||||||||| || || | | Sbjct 1320 -TTTCC-----ATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCACA 1373 Query 37488 TTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTA 37547 ||||| || ||||| ||||| |||||||| || | ||||| | | ||| || || | | Sbjct 1374 TTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTGA 1433 Query 37548 AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607 || | | | ||| ||||||||||| || ||||| || || |||||||| | | Sbjct 1434 CTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCTAAA 1493 Query 37608 ACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTT 37667 || | | || ||||| | ||||| | | | | |||||| | || ||||| Sbjct 1494 ACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATGTCTTTG 1553 Query 37668 GATAAATCAACTTCATCAACGGTCCAAAA 37696 || | |||||| || || ||||||||||| Sbjct 1554 GAGAGATCAACCTCTTCTACGGTCCAAAA 1582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590959691151800