Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq183115 152 2e-32 >seq183115 Length=3769 Score = 152 bits (168), Expect = 2e-32 Identities = 226/320 (71%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 ||||||||| || || ||||| || || | | |||||| || || ||||| || | Sbjct 2707 CATCTGCATAGTGCCTCCAACATTTACTATTACTTCAGTAGTATATTTTTCAACCCCTGC 2648 Query 26010 CTTTTC---CCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 | || ||| || || |||| |||| || ||||| |||||||| || ||||| Sbjct 2647 TTGATCAGTCCATTTACGAGTTTGCAGTGCGCCTTCAATATAAACCTGAGAGCCTTTGCG 2588 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 || ||||| || || | || || | ||||||||||| || | || ||||| || || Sbjct 2587 AAGATACTCACCAGCAACTTCAGCCAGCTTGCCAAACAAAACAATACGGTGCCACTCGGT 2528 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAAT 26186 | ||||| |||| || || ||||| || |||||||||||| || || | || || Sbjct 2527 CTTCTCTTTAGTTTCCCCAGTTTGCTTGTCACGCCAGCTTTCTGAAGTAGCCAGCGTGAT 2468 Query 26187 GTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACC 26246 |||||| || || |||||||| |||||||| || | || || || | ||||| || || Sbjct 2467 GTTGGCAACAGCACCGCCATTCGGCATGTAGCGAACTTCCGGGTCTTGACCCAGATTTCC 2408 Query 26247 GACAAGGATTACTTTATTTA 26266 || | |||||||| |||| Sbjct 2407 AACTAAAATTACTTTGTTTA 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159469736516970