Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq183044 181 7e-41 >seq183044 Length=3031 Score = 181 bits (200), Expect = 7e-41 Identities = 689/1063 (65%), Gaps = 44/1063 (4%) Strand=Plus/Minus Query 72883 TATGTTCTTAGGTCAACATGTAAACGTATCTCGGTACGACCAACAAAAGCTTAGTGCATT 72942 |||||| || ||||| | || ||| | | || | ||||||||||| || ||||| Sbjct 2115 TATGTTTTTCGGTCAGCCGGTTAACATTGCACGCTTTGACCAACAAAAA--TATGGCATT 2058 Query 72943 T--GAAAAATTAATAGAAAAACAATTGAGCTTCTTTTGGCGACCTGATGAAATAGATGTA 73000 | |||||| |||| ||||||||| | || || ||||| || || ||| | |||||| Sbjct 2057 TTTGAAAAACTAATTGAAAAACAACTTTCTTTTTTCTGGCGCCCAGAAGAAGTTGATGTA 1998 Query 73001 TCAAAAGACCGTTCTGATTGGCAAAAAATGACTGACTCTGAAAAGCATATTTTCATATCA 73060 ||| || || |||| ||| || || | |||||| || |||||||| Sbjct 1997 TCACGTGATCGCATCGATTATCAAGCCTTGGCTAAACATGAAAAACACATTTTCATCAGT 1938 Query 73061 AATCTTAAATACCAAACATTGCTTGATAGCATGGCTGCACGTTCTGTTAATATGGTATTA 73120 ||| | ||||| ||||| || | ||| || | |||| | || | | ||| Sbjct 1937 AATTTGAAATATCAAACTCTGTTGGATTCTATCCAAGGACGTAGTCCAAACGTAGCATTG 1878 Query 73121 CTTCCACTTGTATCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCATTTAGTGAA 73180 || ||| | | ||| | |||||| | ||||| ||| | ||||| |||||||| |||| Sbjct 1877 CTACCATTGATCTCTATTCCTGAACTGGAAACTTGGGTGGAAACCTGGGCATTCTCTGAA 1818 Query 73181 ACTATTCACTCTCGCTCATATACTCATATCTTGCGTAACCTTTTCGTAGAT---CCAAGT 73237 || || || || || || ||||| ||||| | ||||| | |||| || ||| Sbjct 1817 ACCATCCATTCCCGATCTTATACGCATATTATACGTAA---TATCGTTAATGACCCAGCA 1761 Query 73238 GAAGTATTTGATGATATTACAATTAACCCTGAAATATTAAAACGTGCTGAAAGTATCGCC 73297 ||| || |||||||||| | |||| |||| | ||||| || |||| | Sbjct 1760 CTAGTTTTCGATGATATTATCACTAACGAACAAATCCTTTCGCGTGCCAAAGATATCTCT 1701 Query 73298 AAATACTTTGATGATGTGAT---ACTGACAACTCAGTTCATTCAATCTCA-AGGTGAAGG 73353 |||| ||| ||| | || | |||| ||| | | |||| ||| ||||| Sbjct 1700 GGTTACTATGACGATCTAATCGAAATGAC----CAGCTACTGGTATCTGTTAGGAGAAGG 1645 Query 73354 TACTTATCAGGTCAATGGTGAAGAGTATGTAGTCTCAAA--GCGTAAGCTTAAAGAGCGA 73411 | | | || | ||| || | ||| || | || ||| ||| ||| ||| Sbjct 1644 TGTGCACAAAGTGGACGGTAAA-ACTAT-TACCGTTAACTTGCGGGCGCTAAAAAAGCAG 1587 Query 73412 CTTTATCT-TGCCGTTTGTGCTGTCAATGCCTTAGAAGCTATCCGCTTTTACGTAAGTTT 73470 |||||| | |||| || | ||||||||| |||||||| || || |||||||| ||||| Sbjct 1586 CTTTATATATGCCTCATGAG-TGTCAATGCGTTAGAAGCAATACGTTTTTACGTGAGTTT 1528 Query 73471 CGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCCAAGATTATTAA 73530 || ||||| || ||||| ||||| || || | | ||||||||||| || || ||||| Sbjct 1527 TGCCTGTTCTTTCGCTTTCGCAGAGCGCGAATTGATGGAAGGTAATGCTAAAATCATTAA 1468 Query 73531 ACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCAGATGATTCTGAATAACTG 73590 || || || ||||| ||||| || ||||| || || |||||| | ||| | |||| Sbjct 1467 GCTTATTGCTCGTGACGAAGCGTTACACTTGACCGGAACTCAGCATA-TCTTA--AACTT 1411 Query 73591 G---CGAACTGGCAAGGATGATCCTGAAATGCAAGAGATTGC---AGAAGACCTTAAAGA 73644 | || | || | ||||||| |||||| || ||||| |||| || ||| Sbjct 1410 GTTACGTAGCGGTGAAGATGATCTAGAAATGGCTGAAATTGCCAAAGAATGCCGCCAAG- 1352 Query 73645 TGTAAGTCTTAAGATCTTTATGGATGTTG---TTGAAG-AAGAAAAGCAATGGGCAAAAT 73700 ||| ||| |||| | || | ||| | || | ||||| | ||||| ||| Sbjct 1351 ----AGTGTTACAATCTCTTTG--TTTTGGCAGCGCAGCAGGAAAAAGAGTGGGCTGAAT 1298 Query 73701 ATCTATTCAAAGATGGGTCAATGATCGGTCTTAATGAAGAAATACTTTGCCAGTACGTTG 73760 || | || | | || || ||||| ||||| || | || || | || |||||| ||| Sbjct 1297 ATTTGTTTAGCGGCGGTTCCATGATTGGTCTGAACAAGGATATTTTGTGGCAGTACATTG 1238 Query 73761 AGTACATTGCTAATCATCGTTTACATAGCCTAGGCTTTGAAAAACCATTTGATATTAAGT 73820 |||| || ||||| || | || | | |||| || || | | | | Sbjct 1237 AGTATATCACTAATATCCGCATGAATGCGGTTGATCTTGATCTGCCCTTCAAGACCAGAT 1178 Query 73821 CTAATCCTATTCCGTGGATTAGCTCTTATCTAACAAGTGATAATGTGCAAGTTGCACCTC 73880 | || || || || ||||| | |||| || |||||| |||||||||||||| | Sbjct 1177 CAAACCCGATCCCTTGGATCAATTCTTGGCTGGTGTCTGATAACGTGCAAGTTGCACCAC 1118 Query 73881 AAGAAACTGAAATTACATCGTACTTAGTTGGTCAAGTTGACTC 73923 | ||| |||| ||| || || |||| || || |||| || Sbjct 1117 AGGAAGTTGAAGTTAGCTCCTATCTAGTCGGGCAGATTGATTC 1075 Score = 150 bits (166), Expect = 1e-31 Identities = 475/731 (65%), Gaps = 4/731 (1%) Strand=Plus/Minus Query 72021 CCAAGATTATCCAATACTAGCTGCTGAAAATGCTACCAAGCGAAGACGTACTTTAGGTGT 72080 |||||||||||| || | ||| || || | | | | | | | ||||| | ||| | Sbjct 3031 CCAAGATTATCCTATTCCAGCCGCCAAACGGGGTGCTATGGGCCGTCGTACGCTGGGTAT 2972 Query 72081 TGGCATTATTAATTATGCTCATCACTTAGCTAAAAATGGTGTTAAATATTCTGATGGCAG 72140 ||| | ||||| ||||| || || |||| ||||| ||| | |||||||||||||| Sbjct 2971 CGGCGTCATTAACTATGCATATTACCTAGCAAAAAACGGTATGCGCTATTCTGATGGCAG 2912 Query 72141 TGCCAACAATTTAACTCATGA-ACTCTTCGAAAGTTTTCAGTATTACCTATTGAAAGCAA 72199 |||||| | |||| || | ||| || || | ||||| | | || |||| Sbjct 2911 CGCCAACGAACTAACGCACCAGACTTTT-GAGGCAATCCAGTACTGGTTGCTGCGAGCAT 2853 Query 72200 GTTGTGATTTAGCCAAAGAACAAGGCGCTTGTCCTGCATTCCATGAGACAACTTATTCAC 72259 | || | || | ||||| |||||||| || ||| |||| || | ||| | | Sbjct 2852 CTAACGAACTGGCAATCGAACAGGGCGCTTGCCCGTGGTTCAATGAAACTAGGTATGCCC 2793 Query 72260 AGGGTATATTACCTATTGACCGCTATAATAAGTCAGTAGATGGTATTCATAGTGAAGAGT 72319 | || ||| | || ||||| |||||| ||| ||||| | || || | | | Sbjct 2792 AAGGCATACTGCCCATTGATACCTATAAAAAGGATGTAGACGCCATCAGTAATACACCGC 2733 Query 72320 TACATCTTCCGTGGGAGCAATTGAGAGAAGATATTTTGAAATACGGTTTACGTAATTCTA 72379 | | || ||||| || | || || | ||||| | ||||| |||| Sbjct 2732 TTCTGCTGGACTGGGAAGCGCTGCGCGAGTCGATCAAGGTCCACGGTCTGCGTAACTCTA 2673 Query 72380 CTGTATCCTCATTGATGCCAAGTGAAACAAGTTCTCAGGTATCTAATGCAACAAATGGTA 72439 || |||| | ||||||| ||||||| || ||| |||| ||||| || ||||| | Sbjct 2672 CTCTATCTGCGCTGATGCCTTCTGAAACATCATCGCAGATATCCAATGCGACCAATGGAA 2613 Query 72440 TTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTGAAGCAAG 72499 |||||||||| |||||| || |||||||||||| ||||| |||||| | |||| Sbjct 2612 TTGAACCACCCCGCGGTCATATCAGCATTAAAGCATCAAAAGACGGTATCCTACGCCAAG 2553 Query 72500 TAGTACC-TCATATTGGTACAATGGCTAATGACTATGAATTGTTGTGGAATATTCCAAGC 72558 | || || |||| | | || || || ||| || ||||| |||| |||| Sbjct 2552 TCGTGCCGGAATATGAGCGC-CTGAAAGATAGTTACGAAATGCTGTGGGATATGCCAAAT 2494 Query 72559 AATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCGATCAGGCAATCTCT 72618 ||| | || ||| | | | |||| | ||||| |||||| |||| || ||||| || Sbjct 2493 AATGACGGTTATTTACAGCTGGTTGGTCTGATGCAGAAGTTTATCGACCAAGCAATTTCA 2434 Query 72619 GCGAACACAAATTATGACCCTACTAAATTCGCAAATGGCAAAGTCCCAGTTAAGCAAATT 72678 | ||||| || || ||||| || || | ||||| ||||| || | || ||| | Sbjct 2433 TCCAACACTAACTACGACCCGACACGCTTTGTTAATGGTAAAGTACCGATGAAACAACTA 2374 Query 72679 CTTAAAGATTTAATACGAGGCTATAAGCTTGGTGTTAAAACATTCTATTACCATAACACC 72738 || |||||| | | | || ||| |||| || ||||| | || || || || || Sbjct 2373 CTGAAAGATCTGCTTACTGCTTACAAGTTTGGCGTAAAAACTCTGTACTATCAAAATACT 2314 Query 72739 CGTGATGGTGC 72749 || || ||||| Sbjct 2313 CGGGACGGTGC 2303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334920543271015