Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq157162 145 6e-30 seq101432 120 2e-22 >seq157162 Length=2207 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| || || |||||||| || ||||| ||||| |||||||| |||| Sbjct 615 CCACCACGTAGACGCAATACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAGTCGGAT 556 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| || || || || || | ||| |||||||| || || Sbjct 555 AGAGTACGTCCATCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCTGGTGGG 496 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| |||||||| ||| ||| |||| | ||||| || | || || Sbjct 495 ATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTGTCCGATGGCTCGACC 436 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || | ||||| || ||||| |||| ||||| || || || ||||| || Sbjct 435 TCCAAAGTGATGGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCATTGT 386 >seq101432 Length=3068 Score = 120 bits (132), Expect = 2e-22 Identities = 132/173 (76%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 ||||||| || ||||| | |||||||||||||||||| || || ||| |||||| | Sbjct 1280 CATAACCATTTGGATCACATCCATCCAAACTGTATTTATCATTCAAAAGTATGGCCGTCT 1339 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 ||||||| | ||| | | | ||||||||||||||||||||||||||| || | || Sbjct 1340 CCAAAGCCAATTCAGGTGTAGGTGCCCATTCTAATATTTTTTTAGCCCAATACATGCGCA 1399 Query 13881 TATATCCGTGCATTTT-GCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCA 13932 | |||| |||||||| ||| ||| || |||||| | || || | |||||| Sbjct 1400 AAAATCCATGCATTTTACCCTCACGTATT-AGCTGTATTTGTGCTGAGTTCCA 1451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395393150586315