Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq183044 196 3e-45 >seq183044 Length=3031 Score = 196 bits (216), Expect = 3e-45 Identities = 291/406 (72%), Gaps = 9/406 (2%) Strand=Plus/Minus Query 70305 GAAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTA 70364 || |||||||||||| |||| ||| | || ||| | ||||||| || || ||||| || Sbjct 2124 GATGGAACCTATGTTTTTCGGTCAGCCGGTTAACATTGCACGCTTTGACCAACAAAAATA 2065 Query 70365 CCGTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGT 70424 | || ||||| || ||||||||||||||||| || ||||||||||| |||||||| Sbjct 2064 TGGCATTTTTGAAAAACTAATTGAAAAACAACTTTCTTTTTTCTGGCGCCCAGAAGAAGT 2005 Query 70425 CGACATTACCAC-TGACCGCATCGACT-TCAATACCAAGCTGCAAGAGCACGAGCGCCAT 70482 || | | ||| ||| |||||||| | |||| | ||| | || || || Sbjct 2004 TGATGT-ATCACGTGATCGCATCGATTATCAAGCCTTGGCTAAA----CATGAAAAACAC 1950 Query 70483 ATTTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCT 70542 |||||| | || || || || || || ||||||||||| | || || || ||||| Sbjct 1949 ATTTTCATCAGTAATTTGAAATATCAAACTCTGTTGGATTCTATCCAAGGACGTAGTCCA 1890 Query 70543 AACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGG 70602 |||| | || |||| || ||||||| |||||||| ||||| || ||||| || |||||| Sbjct 1889 AACGTAGCATTGCTACCATTGATCTCTATTCCTGAACTGGAAACTTGGGTGGAAACCTGG 1830 Query 70603 TCGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGAT 70662 | ||||| || || || || ||| |||||||| ||||| || ||| || || Sbjct 1829 GCATTCTCTGAAACCATCCATTCCCGATCTTATACGCATATTATACGTAATATCGTTAAT 1770 Query 70663 GACCCTAGCA-TCGTTTTCGACGGCATCGTCACGGACGAAGAGATC 70707 ||||| |||| | |||||||| | || |||| ||||| | ||| Sbjct 1769 GACCC-AGCACTAGTTTTCGATGATATTATCACTAACGAACAAATC 1725 Score = 113 bits (124), Expect = 3e-20 Identities = 281/422 (67%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 69644 TGGGAAGAGCTGCGTG-GCCGTATCCGTGAGCATGGTCTGCGTAACTCAACTCTGACCGC 69702 ||||||| |||||| | | || ||| | || |||||||||||||| ||||| | || Sbjct 2721 TGGGAAGCGCTGCGCGAGTCG-ATCAAGGTCCACGGTCTGCGTAACTCTACTCTATCTGC 2663 Query 69703 TCAAATGCCGTGTGAGACGTCCAGCCAGATCACCAACTCCACCAATGGTATTGAGCCGCC 69762 | ||||| | ||| || || ||||| |||| | |||||||| ||||| || || Sbjct 2662 GCTGATGCCTTCTGAAACATCATCGCAGATATCCAATGCGACCAATGGAATTGAACCACC 2603 Query 69763 CCGCGGCCCGGTATC--CGTGAAGTCTTCCAAAGACGGCATCGTGAAGATGGTCGTTCCA 69820 |||||| | |||| | | || | || |||||||| ||| | ||||| || Sbjct 2602 CCGCGGTC--ATATCAGCATTAAAGCATCAAAAGACGGTATCCTACGCCAAGTCGTGCCG 2545 Query 69821 GACTTCGCTCAACTGAAAGACCAGTACGAGTACCTGTGGGATATGCCGGATAACCGCGGC 69880 || | | | |||||||| ||||| |||||||||||||| |||| ||| Sbjct 2544 GAATATGAGCGCCTGAAAGATAGTTACGAAATGCTGTGGGATATGCCAAATAATGACGGT 2485 Query 69881 TATCTGACTAAGGTGGCCATCATTCAGAAGTTCTTCGATCAGGCCATCTCTGCGAACACC 69940 ||| | ||| | | || |||||||| |||| || || || || | ||||| Sbjct 2484 TATTTACAGCTGGTTGGTCTGATGCAGAAGTTTATCGACCAAGCAATTTCATCCAACACT 2425 Query 69941 AACTACGACCCGACTCGCTTCCCTGGCGACAAGGTTCCAATGATGAAGCTGCTGGAAGAT 70000 |||||||||||||| ||||| | | || || || |||| | || ||| ||||| Sbjct 2424 AACTACGACCCGACACGCTTTGTTAATGGTAAAGTACCGATGAAACAACTACTGAAAGAT 2365 Query 70001 CTGCTGTTTGCGTATCAGCAAGGTGTGAAGACGCTTTATTACCACAACACGCGTGATGGC 70060 ||||| ||| || || || || || || || || || || || || || || || Sbjct 2364 CTGCTTACTGCTTACAAGTTTGGCGTAAAAACTCTGTACTATCAAAATACTCGGGACGGT 2305 Query 70061 GC 70062 || Sbjct 2304 GC 2303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329693845373700