Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq181757 104 2e-17 >seq181757 Length=1221 Score = 104 bits (114), Expect = 2e-17 Identities = 180/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 9000 ACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGT-AACCTCTA 9058 ||| ||||| || || || || ||||||| || || ||| ||| | | ||| || Sbjct 383 ACCAGTTGATCCGAAACCACCAGCTCCGCGTTTAGTTTCA-TCGAGTTTATCAACTTCCT 441 Query 9059 CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCA 9118 ||| | |||||||| || | ||||| || ||||| ||||| | || || |||| Sbjct 442 CCAATTCAGGATAAAATATGCGCTCACATATGAATTGGGCAATGCGATCACCACGCTTCA 501 Query 9119 CGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCT 9178 | ||||||| || ||||||||||| || || || |||| ||||| | |||||| | Sbjct 502 CTTCAAAGTCGACCTCCGAATGATTGAAGAGTACAACACCCAAATTACCGCGGTAATCTT 561 Query 9179 CATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCG 9238 |||||| ||||| || || || || ||||| | ||| | || | || || || || | Sbjct 562 CATCGACTACACCTGCTCCAACATCTATGAAATTCTTTGCAGCCAAGCCTGAACGAGGAG 621 Query 9239 CGATTCGACCGTAGCATCC 9257 | | |||||||| |||| Sbjct 622 CAACACGACCGTATGATCC 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380086620519285