Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq183117 120 7e-22 seq182444 102 2e-16 seq128143 91.5 3e-13 seq183174 89.7 1e-12 >seq183117 Length=3786 Score = 120 bits (132), Expect = 7e-22 Identities = 281/418 (67%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 133904 TTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACTA 133963 || ||||| |||||| ||| ||| | || ||| || | ||||| ||| || ||| | Sbjct 3126 TTAAAAAACAATCCTTTTTCACGAAGACACATTTTATCAGCATGAAATCCTGCAGAAATT 3067 Query 133964 GATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAG 134023 | || ||| | | |||||||||||| || | |||||| | ||| ||| | ||| Sbjct 3066 AAAAATATGGCACTACCACCATGTCATACTTTAATTCAATTTTACGTTTCTGATGATAAA 3007 Query 134024 ---TTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAAC 134080 ||||| ||| ||||||||||||| ||| | || |||||||| || || || Sbjct 3006 AAATTATCTTGTCAATTATATCAACGTAGTGCAGATATTTTTTTAGGAGTTCCTTTTAAT 2947 Query 134081 ATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGT 134140 |||||||| ||| ||||| |||| |||||||||||| | ||| || || || | | Sbjct 2946 ATTGCTTCTTATGCATTATTAACAATAATGTTAGCACAAATATGT-GGCTATCAGCTAG- 2889 Query 134141 GAGTTTGTATGGATGGGT--GGAGATGTTCACATTTATAAAAATCACGTAGAAGCAGTTC 134198 ||| | ||| || | || |||| ||| ||||||| ||||| | | | || Sbjct 2888 GAGAATTTATTCATACTTTAGGTGATGCTCATATTTATAGTAATCATTTTTCACAAATTA 2829 Query 134199 AGGAACAACTTTCACGTGAACCTAAAGAATTACCAACTCTTTGGATTGATACTAGTATTA 134258 | |||||| | | |||| ||| ||| |||| | | ||| ||| | ||||| Sbjct 2828 ATGAACAATTAAGTAGAAAACCAAAATCATTGCCAATTTTAGTTATTAATAAAAATATTA 2769 Query 134259 CTGA--TATTAAAGATTTCACAATGGAATCTTTTAAATTGGAAAATTATAATCCAGAT 134314 || | |||| | |||| | | | ||| ||||||||| ||| | ||| ||||| || Sbjct 2768 CTAATTTATTTA--ATTTTAAATTTGAAGATTTTAAATTAGAACAATATGATCCATAT 2713 >seq182444 Length=1482 Score = 102 bits (112), Expect = 2e-16 Identities = 304/459 (66%), Gaps = 20/459 (4%) Strand=Plus/Plus Query 111394 GATGAAAAAATATATTGTAGGTGGTTTTGTACGTGACAAATTGCTTGGCCTCCAACCGAA 111453 |||||||| |||| |||| |||||| ||| ||||| | |||| | | | | ||| Sbjct 944 GATGAAAACATATCTTGTCGGTGGTGCTGTGCGTGATGGACTGCTAAACTTGCCGCTGAA 1003 Query 111454 AGACAAAGATTATGTACTGGTAGGTGCTAAACCAAAAGATATTTCATATCTTGAAAGCAT 111513 ||||| ||||| || ||||||||| | | | | || ||||| || Sbjct 1004 AGACAGAGATTGGGTTGTGGTAGGTGGTTCTTCTCAGCAAATG------CTTGAC--CAA 1055 Query 111514 TGGTTACAAACAAGTTGGTGCAGATTTTCCGGTATATTTGTCGCC-TGAAGG--TGATGA 111570 || || |||||||| ||| ||||| || || | | | || || | ||| || Sbjct 1056 -GGCTATAAACAAGTAGGTCGTGATTTCCCAGTCTTTCTTCATCCATGTACCCATGAAGA 1114 Query 111571 ATATGCACTTGCACGTATTGAACGTAAAACTGGTACTGGATACGATGGTTTT-TCTGTTG 111629 || || | ||||||| ||||||||| |||| | ||| || | ||||||| ||||||| Sbjct 1115 GTACGCTTTAGCACGTACTGAACGTAAGTCTGGCAGTGGTTATGCTGGTTTTATCTGTTG 1174 Query 111630 AAACC--CAGGGTGTAACTTTGGAACAAGATTTATTCCGTCGAGATTTAACTATCAATGC 111687 | | | | | || | || |||||||| ||| || ||| | ||||| ||||| Sbjct 1175 TTTCGAGCCTGATATTACGCTAGAGCAAGATTTGGCCCGACGCGATCTGACTATAAATGC 1234 Query 111688 TATTGCTTGGGAC-CCAATTACTAAAACCCATATCGACCCATATAAAGGCAAAGAAGATC 111746 |||||| | ||| || || | || || ||||||||| | || |||||| Sbjct 1235 TATTGCACGTGACTCCGATGGTCATTAC---TA-CGACCCATACAGCGGTCGTGAAGATT 1290 Query 111747 TAAAAAATAAAGTACTGAAACATGTATCAGATGCATTCAAAGAAGATCCACTTCGTGTTC 111806 ||||| | ||| ||||| || ||||| ||||| |||||||| || || ||| Sbjct 1291 TAAAACGACGTCTGCTGCGTCATGTTTCTGATGCTTTCAATGAAGATCCTCTGCGCGTTT 1350 Query 111807 TGCGTCTTGCACGTTTCGCTGCTCGTTATGCTGATTTTA 111845 ||||| | || ||||| ||||| ||| |||| || ||| Sbjct 1351 TGCGTGTGGCGCGTTTTGCTGCAAGTTTTGCTCATCTTA 1389 >seq128143 Length=5596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 133910 AATAATCCTGATTCTCGACG--TCATATTCTAACTGCATGGAATGTTGGTGAACTAGATA 133967 |||||||| || |||||| ||||| | | ||||||||||| || ||| || Sbjct 1465 AATAATCCAAATGATCGACGCATCATAATGT--CTGCATGGAATCCTGTTGATATACCAC 1408 Query 133968 AAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTAT 134027 ||||| | || |||||||||||||| | ||||| ||||| ||||| || ||| Sbjct 1407 AAATGGCATTACCACCATGTCATTGTCTGGCGCAATTTTTCGTTGCCAACGGTGAGCTAT 1348 Query 134028 CATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCTT 134087 ||||| |||| ||||||||| ||| | || || || |||||||| ||||||| Sbjct 1347 CATGTCAATTATACCAACGTAGCGCCGATATGGGTTTGGGTGTGCCATTCAATATTGCTT 1288 Query 134088 CATATTCATTACTAACTCATATGTTAGCACA 134118 | ||| | | || ||| | ||| | ||||| Sbjct 1287 CCTATGCTCTGCTTACTTACATGATTGCACA 1257 >seq183174 Length=4575 Score = 89.7 bits (98), Expect = 1e-12 Identities = 219/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 73722 CGTGATTACGGTAAATGCTTCACTGTGAATAATATGATGAACAAAGAATCTGTACGTTCA 73781 |||||| ||||| ||| || | || || |||| || |||||| | ||| Sbjct 824 CGTGATATTGGTAAGCATTTCTCTATTAACAAGCTGATCAATAAAGAAGCGATACAACAG 765 Query 73782 CGTATTGAA-CGCGATGAACAAGGTATTTCTTTCACTGAATTTTCGTATCAAATTCTTCA 73840 ||| ||||| || ||||| || |||||||| || || |||||||| ||| | | ||||| Sbjct 764 CGT-TTGAATCGTGATGATCACGGTATTTCATTTACCGAATTTTCCTATAACTTGCTTCA 706 Query 73841 AGCAATGGACTTTGAATATTTGTACGAAATGAATAACTGCAAAATCCAAATTGGTGGTTC 73900 || ||||||| ||| | |||| ||||| | | | |||||||||||||| Sbjct 705 AGGTTATGACTTTGCCTATCTTAACGAGCGTTATAACGTCGTATTGCAAATTGGTGGTTC 646 Query 73901 TGACCAATGGGGTAATATGATTGCTGGAATTGATTTGATTCATAAAATCCACGGCAATGA 73960 ||| || ||||| ||||| | | | || || ||||||| | | | || | || | Sbjct 645 TGATCAGTGGGGAAATATTACTTCCGGTATCGATTTGACGCGGCGACTACATCGTAACCA 586 Query 73961 TGCAGACTGCGGTGTTATCACTATACCACTAGTTACTAAATCTGATGGTACTAAATTTGG 74020 || | || | ||| ||||| | |||| ||||||||||| | ||||| || Sbjct 585 ---AGTTT---TTGGCCTGACTGTACCATTGATTACCAAATCTGATGGAAAAAAATTCGG 532 Query 74021 TAAATCAGAATCTGGTACTATCTGGTTA 74048 ||| | ||| || ||| |||||| || Sbjct 531 AAAAACTGAAGGTGATACCATCTGGCTA 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144895321600910