Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq183117 143 2e-29 >seq183117 Length=3786 Score = 143 bits (158), Expect = 2e-29 Identities = 195/267 (73%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTA-CTTCCAGTC 78423 |||||| | ||||||||||| ||||| | || ||||| || ||||||| || || | Sbjct 2842 ATGATTACTATAAATATGAGCATCACCTAAAGTATGAATAAATTCTCCTAGCTGATAG-C 2900 Query 78424 CGCACAAATGCGC-AATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482 | || | || || || | ||| ||| | |||||| || |||||||| ||||| |||| | Sbjct 2901 CACATATTTGTGCTAACATTAT-TGTTAATAATGCATAAGAAGCAATATTAAAAGGAACT 2959 Query 78483 CCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGAT 78542 ||||| || | || | || ||||| || ||||| ||| || ||| |||| | || Sbjct 2960 CCTAAAAAAATATCTGCACTACGTTGATATAATTGACAAGATAATTTTTTATCATCAGAA 3019 Query 78543 ACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGA 78602 |||||||| || | || ||| ||||| || ||||||||||||| | | || |||||| Sbjct 3020 ACGTAAAATTGAATTAAAGTATGACATGGTGGTAGTGCCATATTTTTAATTTCTGCAGGA 3079 Query 78603 TTCCAAGCAGACACAATATGTCTGCGT 78629 || || || || | ||| ||||| ||| Sbjct 3080 TTTCATGCTGATAAAATGTGTCTTCGT 3106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299489470231000