Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq183157 176 1e-39 >seq183157 Length=4427 Score = 176 bits (194), Expect = 1e-39 Identities = 532/810 (66%), Gaps = 15/810 (2%) Strand=Plus/Plus Query 45429 AGAAAACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGA 45488 |||||| |||||||| ||||| || || |||| | | | ||| | || | | Sbjct 2917 AGAAAAA-ATGAAACAGTATCTGGAATTAATGCAGTATGTTCTCGAACATGGTACAGCAA 2975 Query 45489 AAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACT 45548 || | || || || || | || || |||| || || || | ||| |||| ||||| | Sbjct 2976 AAAATGACCGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAATT 3035 Query 45549 TGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATG 45608 | | || || || ||||| || || || ||||| | || | | ||| |||||| ||| Sbjct 3036 TACGTGAAGGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCATG 3095 Query 45609 AACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCT-ATTTGCAGGAGAATGGTGTG 45667 || || | ||||| | | |||||||| ||| | |||| || || | |||||| || Sbjct 3096 AATTGTTATGGTTCCTCACTGGCGATACTAATAT-CGCTTATCTGAAAGAGAATAAAGTT 3154 Query 45668 ACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAA 45727 | |||||||| || ||||| ||||||| || || ||||| ||| | || || ||| Sbjct 3155 TCTATTTGGGATGAATGGGCGAATGAAAATGGTGACCTCGGTCCAGTATATGGAAAACAA 3214 Query 45728 TGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAG 45787 ||||| |||| |||||||| | | ||||| || | | | ||| Sbjct 3215 TGGCGCAACTGGATTACTGCTGACGGTCGCCAGATTGACCA----GCTGAGCAATGTAAT 3270 Query 45788 -GAAA---TCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGC 45843 |||| | || ||||| || || || || | || | ||||||||||| | Sbjct 3271 TGAAAAGCTAAAAAATAACCCAAATTCACGTCGTATTATTATCTCTGCGTGGAACGTTGG 3330 Query 45844 AAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAA 45903 | | || | |||| |||| || |||||| ||||||||||| | ||| | Sbjct 3331 AGAATTAGATTTAATGGCACTGCCTCCTTGTCATGCTTTTTTTCAGTTTTATGCCGCAGA 3390 Query 45904 TGGCCGGTTGTCATGCATGTGGCAACAGCGTT-CTGTCGATACATTTCTAGGATTGCCGT 45962 | | ||| | ||||| | | ||||||| |||| |||| || || || |||| | Sbjct 3391 TAGTCGGCTTTCATGTCAGCTATACCAGCGTTCCTGT-GATATTTTCCTTGGCCTGCCAT 3449 Query 45963 TTAACATCGCTAGCTATGCGCTGT-TGACACATATGGTTGCCCAACAATGCGACCTCGAT 46021 |||| || ||||| ||| ||| | || |||||| | || ||||| |||| ||| || Sbjct 3450 TTAATATTGCTAGTTAT-AGCTTTCTGGTGCATATGATAGCGCAACAGTGCGGCCTAGAA 3508 Query 46022 GTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAA 46081 || || || | |||| | ||||| || | |||||||| | || || || ||||| Sbjct 3509 GTAGGAGACTTTATTTGGATTGGCGGTGATATTCATTTGTATAGCAACCACCTTGAACAG 3568 Query 46082 GCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAG 46141 || ||||| || | ||| ||||| || ||||||| || ||||| ||||| || Sbjct 3569 GCACGTCTGCAACTAATGCGTGAGCCACGTACGCTGCCACTACTGGTGATGAAACGTAAA 3628 Query 46142 CCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCAC 46201 || ||||| || |||||| | ||| ||||| | || || ||||| || ||| Sbjct 3629 CCAGTATCTATTTTCGACTATCGTTTCGATGATTTCACAATTCAGGGTTATGATCCCCAC 3688 Query 46202 CCGGCGATTAAGGCTCCTGTATCCGTTTGA 46231 ||||| ||||| || | ||| | ||||| Sbjct 3689 CCGGCAATTAAAGCGTCAGTAGCTATTTGA 3718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157407036042630