Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq183258 93.3 5e-14 seq183117 91.5 2e-13 >seq183258 Length=7175 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 74898 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 74957 || |||||||||| ||||||||||||||| ||| || ||||||||||||| |||||| Sbjct 2303 AAGTTGGTGGCCCCAGCTGGATTTGAACCAGCGACAAAGCGATTATGAGTCGCGTGCTCT 2244 Query 74958 AACCATCTGAGCTAAAGGGCC 74978 ||||| |||||||| ||||| Sbjct 2243 AACCAACTGAGCTATGGGGCC 2223 >seq183117 Length=3786 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 148998 AACATTTGTAGAGCCAGACATAAACCATAATAATTCA-GAA--ATACAAGCTTTCCATGC 149054 || ||| ||| |||| ||||| |||||||| ||| ||| ||| |||| ||| Sbjct 3346 AATATTAGTATCACCAGCAATAAATCATAATAACTCATGAACAATAGAAGCAAA--ATGA 3403 Query 149055 TAGTTTTTTAGTAGTAATTGCTGGAAAACCTTTTTGTAAATCAAACCTTAATTGTGTGCC 149114 | |||||| ||||| | | ||||||||||||||||||||||| | | ||| || Sbjct 3404 -ACTTTTTTTGTAGTTAATATGGGAAAACCTTTTTGTAAATCAAAACGCATTTGATAACC 3462 Query 149115 AAATACTGCAATAGTACCAGTTCCAGTACGATCATCAGTTTGATAGCCGCTTTCAAAAAT 149174 ||| | || ||||||||| || || | |||| | ||| ||| || |||| |||| Sbjct 3463 AAAAGTAGAAACAGTACCAGTGCCTGTTCTATCAGCTTTTTTATATCCTTTTTCTAAAAC 3522 Query 149175 ATGTTTAATTAGATCTTGATATTGTTTCAT 149204 || || | || |||| |||||||||||| Sbjct 3523 ATATTGACATAAATCTAAATATTGTTTCAT 3552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538823419445800