Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq183157 150 3e-31 seq183074 87.8 3e-12 >seq183157 Length=4427 Score = 150 bits (166), Expect = 3e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGAC 122422 |||||||| |||||||| ||| ||| | |||| || | || | |||| ||| Sbjct 2924 ATGAAACAGTATCTGGAATTAATGCAGTATGTTCTCGAACATGGTACAGCAAAAAATGAC 2983 Query 122423 CGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAAA 122482 || || || | || || ||||| | || || |||||||| ||| | | | || Sbjct 2984 CGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAATTTACGTGAA 3043 Query 122483 GGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCTG 122542 || || ||||| || || |||||||| ||||| | ||||||||| ||||| | | Sbjct 3044 GGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCATGAATTGTTA 3103 Query 122543 TGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGG 122602 |||||||||| |||||||| || ||| ||||||||||| || || || ||| ||| Sbjct 3104 TGGTTCCTCACTGGCGATACTAATATCGCTTATCTGAAAGAGAATAAAGTTTCTATTTGG 3163 Query 122603 GATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||||||||| ||||| ||||| | ||||| || || || || || |||||||| Sbjct 3164 GATGAATGGGCGAATGAAAATGGTGACCTCGGTCCAGTATATGGAAAACAATGGCG 3219 >seq183074 Length=3272 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 169400 TATTGGCGCGGTACTCAAGTGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCT 169459 || ||| | ||||| |||| || ||| | |||||||||||||||||| | |||| | || Sbjct 1516 TAGTGGTGGGGTACCCAAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCTTC-GACT 1574 Query 169460 TCGTAGGTTCAAATCCTTCCCTCGCCACCAATATT 169494 ||| |||||| |||||||||| | |||||| |||| Sbjct 1575 TCGAAGGTTCGAATCCTTCCCCCACCACCATTATT 1609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 775850299282000