Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq183228 143 3e-29 >seq183228 Length=5652 Score = 143 bits (158), Expect = 3e-29 Identities = 510/781 (65%), Gaps = 27/781 (3%) Strand=Plus/Plus Query 38637 CAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGAATT 38696 ||||||||||||| || ||||| || || || |||| || || | || || || || Sbjct 1087 CAATTTCTTCCAAACATGCAATTTTTAAACCCTGACGCTTTTCTACCGTTTGTACAAAAA 1146 Query 38697 GACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCGA 38756 || |||||| || | |||| | | ||||| |||||||||||||| || || || || | Sbjct 1147 TACTAGCTTCAATTAAACTGTCATAAGTTCCGGTGTCAAGCCAAGTGAACCCACGACCTA 1206 Query 38757 GAACTTCCACTTGTAACT--TCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCTC 38814 | | | ||| | | || ||||| ||| ||||| | |||| ||| | ||||| || Sbjct 1207 GCAGCTGCACATTGAGCTGGTCCTG-ATTC-AGGTACATTTGATTAATAGCTGTGATTTC 1264 Query 38815 CAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCATA 38874 ||||| || || | || | || | | ||| || | || | | ||||| Sbjct 1265 TAGTTCACCTCGTTCAGATAAGTGCACCTTTTTGGCAAATTCCACCACTTGGCTGTCATA 1324 Query 38875 GAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATAGA 38934 |||||| | || || ||||| || || || || | || ||| |||||||| | ||| Sbjct 1325 GAAATAAAGTCCGGTCACAGCCCAACGAGACTTCGGTTGTTTAGGCTTCTCTTCTAGAGA 1384 Query 38935 -AATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCA 38993 |||| | ||| || ||||||| || ||||| |||||||| || ||| | || Sbjct 1385 CAATA-CGTGAAACTTTTCATCAAATTCCACAACACCAAATCGTTCTGGGTCTATTACTT 1443 Query 38994 AATACCCGAAAATACA--AGCTCCGCCCCAAACATCTACCATCTCACTGGCGTTAATCAG 39051 ||| || ||||||| ||||| | | | | || || ||| |||| Sbjct 1444 GATATCC--AAATACAGTCGCTCCTC----TATTTTTTTCAGCTATCTG-----CTTCAG 1492 Query 39052 TAGTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATAAGAGCAACAG-AGT 39110 | | || ||||| ||| || ||||| | || ||||| | || | |||||||| || Sbjct 1493 TTTTAGACTAAAGCCTTGACCAAAGAAAATATTATCACCCAGTATCA-AGCAACAGCTGT 1551 Query 39111 CTTCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGCAAGACCTC-GTGGCTCGGAT 39169 || | ||||||| |||| ||||||||| || || | || | ||| | |||| || Sbjct 1552 CTCCATCGATAAACTCTTCACCTATGATAAATGCCTGTGCCAAACCACACGGGCTAGG-C 1610 Query 39170 TGGATTGCGTAAGTGAGTTTTATCCCAAA--CATAGACCCATCTCCGAGAAGATACTCAA 39227 || ||||||| | || | ||||| ||| | |||| || || | | | | Sbjct 1611 TGCCTTGCGTATCTCAGACGAAGGCCAAATTCATCG--CCATTACCCAGCAACTGTTGAT 1668 Query 39228 AGTCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCA 39287 | | | |||||| |||| || || || || |||||||| || | || | ||| | Sbjct 1669 AATGTGGTTGATCATCTGGCGTAGTAATAATAAAAATATCGCGGATTCCCGCAAGCATGA 1728 Query 39288 ATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCA 39347 ||| ||||| || ||||| ||||| || || || || ||||| | | || ||| | Sbjct 1729 GTACTGATAATGGATAGTAAATCATCGGCTTATCGTAAACAGGCAATAGCTGTTTGGATA 1788 Query 39348 CACTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCA 39407 || ||| || | |||| ||| || || || ||||| || | || ||||| |||| Sbjct 1789 GACAGCGCGTGATGGGATAAAGACGAGTGCCTGACCCTCCTGCAAGAACGATACCCTTCA 1848 Query 39408 T 39408 | Sbjct 1849 T 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471547515135400