Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq114852 132 2e-26 >seq114852 Length=3422 Score = 132 bits (146), Expect = 2e-26 Identities = 295/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | |||||| ||||| | ||||||||||||||||| || | |||||| || Sbjct 2070 CATAAAAAGATCTGGTATCCATAAAGCATAAAATAAATCTCTAGCACGATGTTCTTCCTT 2129 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 || ||| || || |||| ||| || || ||||| | ||||| |||||||||||||||| Sbjct 2130 GCCAGTG-TTTTTCTTTAAATCCAAAAACTCAAATACATCTGCATGCCATGGTTCTAAAT 2188 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 |||| ||||| || | ||| || || || |||||||| || | ||| | || Sbjct 2189 AGATTGCAAACGCGCCAGGACGTTTACCACCGCCCTGATCTACATAACGTGCCACATTAT 2248 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGG 26171 |||| ||| |||||||||| || || ||| | || || ||||| | ||| | Sbjct 2249 TGAATACTCTCAACATTGGTACCAAACCATTCGATGTGCCATTTGTACCGGCAATTGCCG 2308 Query 26172 ATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAG 26231 ||| | | | ||| || ||| | || || |||||||| |||| ||||| Sbjct 2309 TGCCTCTAGCGCGTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTGGAAATTA 2368 Query 26232 CTGCACA---ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTA 26288 |||||| || || ||| | ||| || || | || ||| | |||| | Sbjct 2369 ATGCACATTGATGTG---CTGAAGTGAATATGCCATCAATCGAATCGGCGACCATTGTCA 2425 Query 26289 ATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAG 26348 | | ||| ||||| |||| ||| | || ||||| | | | || | ||| |||| || Sbjct 2426 AGAGAAAGCAAGATGATAGTTGTGGCTGCCTTGTTGCGGCAGCGAACAGTGTTGGTGAAG 2485 Query 26349 CATGAGTATAATATCCTTC 26367 |||| ||| |||| | ||| Sbjct 2486 CATGCGTAAAATAACGTTC 2504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252474731967125