Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq62029 105 8e-18 >seq62029 Length=5761 Score = 105 bits (116), Expect = 8e-18 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | ||||||||| ||||| ||||||||||||||||| || || ||| Sbjct 1195 ACACCAATAGGCCCCATGCCAGGACCACCACCACCATGTGGAATACAGAAAGTTTTGTGT 1254 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| | ||| | ||||| |||||| |||| ||| || || || || ||| Sbjct 1255 AGATTCAAATGTGACACATCGCTACCATAATCACCTGGACGGCAGAGCCCAACTTGCGCA 1314 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | || ||||| || |||| | ||| | || || ||||| Sbjct 1315 TTCATGTTAGCGCCATCCAAGTACACCTGTCCGCCATGTTTATGTATGAGCTCGCATATA 1374 Query 138363 TGTCTGATGTTTGTTTCAAATAC-ACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | | || | || || || ||||| || |||||||| || ||||| | ||| || Sbjct 1375 TCTGCGACCGTCTCCTCGAACACGCCCATG-GTAGATGGATAAGTGATCATCAAACACGA 1433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 ||||| || | || ||||| ||||||| | | ||||| || ||||||||||| || Sbjct 2302 AGTCCTTCGGGTCCGTGATACACTGCATACATGGCGGACATGTTGGCGAGCAGTGCCTGC 2361 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 ||||| || || ||||| || || ||||| | || ||||||||||| | ||||| || Sbjct 2362 GCTGTACAAATATTACTCGTCGCCTTGTCGCGTCGTATATGCTGCTCGCGTGTTTGCAGC 2421 Query 139380 GCTAA 139384 || || Sbjct 2422 GCCAA 2426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577671806103400