Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq120559 127 3e-24 >seq120559 Length=3671 Score = 127 bits (140), Expect = 3e-24 Identities = 204/289 (71%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || |||||||||||||| ||| | ||| | ||| | ||| | |||||||||||| Sbjct 2164 CCAGTAGCAATAACAAAATCGGTAGGCTTTTCATATTGCAACATCATCCACATAGCCTCT 2223 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 |||||||| | ||||| ||||| ||||| | ||| | ||| || | || | || Sbjct 2224 ACATAATCCATAGCATGACCCCAATCACGTTTCGAATCCAAATTGCCCA---ATTCAAAG 2280 Query 47908 TCTTGCTTACC-TTCAGAGATTGCTTT---TAATGCTCTTGTAATCTTACGAGTTACAAA 47963 | || || | || | | | ||| || | | |||||| || || |||||||| Sbjct 2281 TTTT-CTAATTGTTGATGAAATATTTTCGCTACAGAACGTGTAATTTTGCGTGTTACAAA 2339 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCC 48023 | |||||||||||| || ||||||||||| || || || ||| | || ||| |||| Sbjct 2340 ATTTTCACCACGTCGCGGTGATTCATGATTGAAGAGGATGCCATTGCAAGCAAACATATT 2399 Query 48024 GTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072 ||||| |||||||| || || |||||| | ||||| | ||||||| Sbjct 2400 GTATGCCTCACGATAATTGACCACAATCCAGAAACCATACATTTTTGCA 2448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663969627549400