Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq114852 134 2e-26 >seq114852 Length=3422 Score = 134 bits (148), Expect = 2e-26 Identities = 638/1001 (64%), Gaps = 41/1001 (4%) Strand=Plus/Minus Query 75606 TCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAG 75665 |||| || |||||||||||||| ||| | | ||||| | || ||| ||| | Sbjct 2191 TCTATTTAGAACCATGGCATGCAGATGTATTTGAGTTTTTGGATTTAAAGAAAAACACTG 2132 Query 75666 GTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCA 75725 | | ||||| ||| ||||||| | |||| | | ||||| ||||| ||||| | Sbjct 2131 GCAAGGAAGAACATCGTGCTAGAGATTTATTTTATGCTTTATGGATACCAGATCTTTTTA 2072 Query 75726 TGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTC 75785 |||| || ||||| | || | ||||| || | || || ||||| || |||| Sbjct 2071 TGAAACGTGTTGAAGCTAATGAAGATTGGTCGCTGATGTGCCCTCACAAGTGTCCTGGTC 2012 Query 75786 TCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA 75845 | || | |||||| ||||| ||| | || || || ||||| | ||||| Sbjct 2011 TGCATGAGGTATGGGGTGATGAGTTCGAACAATTATATACTAAATATGAGCAAGAGGGAC 1952 Query 75846 GAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGG 75905 | || ||| ||| || ||| | ||||| |||||| | |||| || | Sbjct 1951 GCGCTAATAAGACAGTGAAAGCACAAAGTCTTTGGTTTGCTATTATTGAATCGCAAGTAG 1892 Query 75906 AGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGA 75965 |||| || |||||||| ||||| ||||||||||| ||||| ||||||||| ||| | | Sbjct 1891 AGACCGGCACACCATACATGCTGTACAAGGATGCATGTAATCGGAAGAGTAATCAACAAA 1832 Query 75966 ATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGG 76025 || | || || || || | ||| | ||||| |||||| | ||||| ||| || Sbjct 1831 ATGTTGGCACCATTAAATGTAGTAATTTATGCACAGAAATTGTTGAGTATTCAGCACCGG 1772 Query 76026 ATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAG 76082 |||| |||||||| ||||| ||||| || || || | || ||| | ||| Sbjct 1771 ATGAAGTAGCTGTTTGTAATTTAGCATCGATTGCGCTAAATATGTTTGTTACACCCGAAA 1712 Query 76083 AGACTCGCACTTTTGATTATGAAAAACTT-CATGAAATCACAAAGATTGTTACCAAAAAT 76141 || || || |||| | ||| ||| | ||| | || |||| || || ||| Sbjct 1711 AG--TCATAC----GATT-TCAAACGCTTAAAAGAAGTTACCAAGACCGTAACGCGTAAT 1659 Query 76142 CTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGA-------AAGTC 76194 ||||| | | || || ||| |||||| | ||| ||| || || Sbjct 1658 CTAAATAAAATTATCGAAGTGAATCATTATCC-------ATTGCCCGAAACAAAGAAATC 1606 Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TT 76253 || | |||| | || || ||| | || || |||||| | || |||| || || | Sbjct 1605 AAACTTCAGACATCGCCCCATCGGTATTGGCGTACAAGGTTTTGCAGATGCTTTAATCCT 1546 Query 76254 TGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAA 76313 | || || ||| ||| || || | || ||||| | || || |||| Sbjct 1545 TATG-CGTTACCCATACGAGAGCGAGCAGGCTGCACTCTTGAATCAACAAATTTTCGAAA 1487 Query 76314 CCATG---TATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCT 76370 | ||| ||| ||||| |||| || |||||||||||||||||| | ||| | | Sbjct 1486 CAATGTACTATGGCGCAT---TGGAAGCTAGTTGTGAATTGGCTGAAAAATATGGTACTT 1430 Query 76371 ATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAG 76430 |||| |||| || || || || | | |||| | || || | |||||||| |||| Sbjct 1429 ATGAAACATACGAAGGCTCACCTGTTAGCAAAGGTATACTCCAATATGATATGT-GGAAT 1371 Query 76431 GTGAAACCAA--GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGG 76488 ||||||| | || | | |||||| ||| | || || || ||| || | || Sbjct 1370 AAAAAACCAACCGATCTA-TGGGACTGGACTGTATTGAAAGAGAAAATAAAGCAGCATGG 1312 Query 76489 TCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 | || ||| || || | ||||||| ||||| || || || || || ||||| || Sbjct 1311 CGTACGCAAC--TCCTTACTTTTGGCACCCATGCCTACTGCATCAACTGCTCAAATTATG 1254 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 || || ||||||| |||||||| || || |||| || || Sbjct 1253 GGCAACAATGAATCTTTTGAACCTTATACTTCAAATATTTA 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595202747189600