Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq183044 358 5e-94 >seq183044 Length=3031 Score = 358 bits (396), Expect = 5e-94 Identities = 760/1123 (68%), Gaps = 61/1123 (5%) Strand=Plus/Minus Query 10913 ATGAATTATTCAGTATTTAACCAAACAAAAAACGACCAACTGAAGGAGCCGATGTTCTTC 10972 |||| |||| | |||| |||| ||||| || || |||| ||| || ||||| ||| Sbjct 2165 ATGATTTATACCACATTTTCGCAAAATAAAAATGATCAGCTGATGGAACCTATGTTTTTC 2106 Query 10973 GGCCAATCAGTTAACGTATCCCGTTACGACCAACAGAAACATGATGTTTTTGAGAAACTA 11032 || || | |||||| | | || | |||||||| ||| ||| ||||||| |||||| Sbjct 2105 GGTCAGCCGGTTAACATTGCACGCTTTGACCAACAAAAATATGGCATTTTTGAAAAACTA 2046 Query 11033 ACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGA 11092 | | | || ||||| || || |||||||| || |||||||||||||| |||| || || Sbjct 2045 ATTGAAAAACAACTTTCTTTTTTCTGGCGCCCAGAAGAAGTTGATGTATCACGTGATCGC 1986 Query 11093 ATCGACTACAGTAAAA---TGACTGATGCGGAGAAACACATCTTCATTAGTAACCTGAAG 11149 ||||| || | || || || | || |||||||| ||||| ||||| |||| Sbjct 1985 ATCGATTA---TCAAGCCTTGGCTAAACATGAAAAACACATTTTCATCAGTAATTTGAAA 1929 Query 11150 TACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATT 11209 || ||||| | | || || |||||||| ||||| || || | || || || || ||| Sbjct 1928 TATCAAACTCTGTTGGATTCTATCCAAGGACGTAGTCCAAACGTAGCATTGCTACC-ATT 1870 Query 11210 G-TGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAGCTTCAGCGAAACCATCCA 11268 | | || | || ||| | ||||||||||| ||||| ||| ||| ||||||||||| Sbjct 1869 GATCTCTATTCCTGAACTGGAAACTTGGGTGGAAACCTGGGCATTCTCTGAAACCATCCA 1810 Query 11269 CTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGACCCTAGTA-TTGTGTTCG 11327 || || || || || || || || || ||||| || |||||||| || | | || |||| Sbjct 1809 TTCCCGATCTTATACGCATATTATACGTAATATCGTTAATGACCC-AGCACTAGTTTTCG 1751 Query 11328 ATGATGTTGTTGAGAATAAGCACATCCTAGAGCGAGCTAAAGATATTGCTCGTTACTACG 11387 ||||| || | || | || ||||| ||| || |||||||| || ||||||| | Sbjct 1750 ATGATATTATCACTAACGAACAAATCCTTTCGCGTGCCAAAGATATCTCTGGTTACTATG 1691 Query 11388 ACGATCTCATC--------------TTGGCA--TGCAAAGAGCA--TGAGC------TAA 11423 ||||||| ||| ||| | || | ||| | || || | Sbjct 1690 ACGATCTAATCGAAATGACCAGCTACTGGTATCTGTTAGGAGAAGGTGTGCACAAAGTGG 1631 Query 11424 ACGGCAAACAC----AC----AA--TGCGCGACCTAAAGAAAAAGTTGTACTTGTGCATG 11473 |||| ||| || || || |||| | ||||| || || | || | ||| | Sbjct 1630 ACGGTAAA-ACTATTACCGTTAACTTGCGGGCGCTAAAAAAGCAGCTTTATATATGCCTC 1572 Query 11474 ATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCA 11533 ||| ||| |||| ||||||||| | ||||| ||||| ||||| || ||||| || || Sbjct 1571 ATGAGTGTCAATGCGTTAGAAGCAATACGTTTTTACGTGAGTTTTGCCTGTTCTTTCGCT 1512 Query 11534 TTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAAGCTTATTGCTCGTGAT 11593 ||||| || ||||| | ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1511 TTCGCAGAGCGCGAATTGATGGAAGGTAATGCTAAAATCATTAAGCTTATTGCTCGTGAC 1452 Query 11594 GAAGCACTACACCAAAGCGGTACACAGCACATGCTGAAGATGTGGAACAACGGCACCGAT 11653 ||||| ||||| | ||| || ||||| || | || ||| | ||| ||| Sbjct 1451 GAAGCGTTACACTTGACCGGAACTCAGCATATCTTAAACTTGTTACGTAGCGGTGAAGAT 1392 Query 11654 GATATGGAAATGGCTTCTATCGCACATGAGTGTCGCGAAGAGT----CAATCGAAATATT 11709 ||| | ||||||||| || || | || || ||| |||||| ||||| | || Sbjct 1391 GATCTAGAAATGGCTGAAATTGCCAAAGAATGCCGCCAAGAGTGTTACAATC----TCTT 1336 Query 11710 CAAGATGGCCGAAGAACAAGAGAAAGACTGGGCAAACTATCTATTCAAAGATGGTGGTAT 11769 |||| | | || || ||||| ||||| | ||| | || | | ||| || Sbjct 1335 TGTTTTGGCAGCGCAGCAGGAAAAAGAGTGGGCTGAATATTTGTTTAGCGGCGGTTCCAT 1276 Query 11770 GATCGGACTAAACAAAGATATTCTATGTGAATATGTTGAGTACATCACAAGCCACCGAAT 11829 ||| || || ||||| |||||| | || | || ||||||| ||||| | ||| || Sbjct 1275 GATTGGTCTGAACAAGGATATTTTGTGGCAGTACATTGAGTATATCACTAATATCCGCAT 1216 Query 11830 GAAGTATGTCGGGCT--ACCTCCGCTACA--CCCGGAAGCAACTAACCCAATCCCATGGA 11885 ||| || | || | || | || || || | | | ||||| ||||| |||| Sbjct 1215 GAATGCGGTTGATCTTGATCTGCCCTTCAAGACCAG----ATCAAACCCGATCCCTTGGA 1160 Query 11886 TCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTGCTCCACAGGAAGCCGAGATTAGTT 11945 |||| ||| |||| |||||| || |||||||| |||||||||| || |||| | Sbjct 1159 TCAATTCTTGGCTGGTGTCTGATAACGTGCAAGTTGCACCACAGGAAGTTGAAGTTAGCT 1100 Query 11946 CATACCTAACCGCACAAGTTGACTCGGACATCAGTGATGATGA 11988 | || ||| || || |||| || || |||||| ||||| Sbjct 1099 CCTATCTAGTCGGGCAGATTGATTCTGAAGTCAGTGCCGATGA 1057 Score = 147 bits (162), Expect = 1e-30 Identities = 426/645 (66%), Gaps = 18/645 (3%) Strand=Plus/Minus Query 10228 TGACGGTAGCGCAAAC-AACAAGACGCATGAGCTGATTGAAGCTATGCAGTTCTACTTGC 10286 ||| || ||||| ||| ||| | ||||| || |||| || || |||| || |||| Sbjct 2920 TGATGGCAGCGCCAACGAACTA-ACGCACCAGACTTTTGAGGCAATCCAGTACTGGTTGC 2862 Query 10287 TACAAGCATCAATGGAACTGGCTAAAGAGAAGGGTATGTGTTCTGGATTCGAAGACACTA 10346 | | |||||| | |||||||| | || |||| || | | ||| | || |||| Sbjct 2861 TGCGAGCATCTAACGAACTGGCAATCGAACAGGGCGCTTGCCCGTGGTTCAATGAAACTA 2802 Query 10347 AGTATGCCAAAGGTGTTATGCCAGTTGATCGTTATAAGTCTGATGTCGACAACACCCACA 10406 ||||||| |||| | |||| ||||| ||||| ||||| ||| || | | Sbjct 2801 GGTATGCCCAAGGCATACTGCCCATTGATACCTATAAAAAGGATGTAGACGCCATCAGTA 2742 Query 10407 CAGCAGAACTACAGATGAATTGGAATTGGTTGCGTAATGAGATT---GTCCATAATGGCC 10463 || || | | || | ||| | | |||| | ||| ||||| || | Sbjct 2741 ATACACCGCTTCTGCTGGACTGGGAAGCGCTGCGCGAGTCGATCAAGGTCCAC---GGTC 2685 Query 10464 TACGTAACTCTACTCTATCTGCATTCATGCCTTCGGAAACATCTTCTCAGGTATCTAACG 10523 | |||||||||||||||||||| | |||||||| |||||||| || ||| |||| || | Sbjct 2684 TGCGTAACTCTACTCTATCTGCGCTGATGCCTTCTGAAACATCATCGCAGATATCCAATG 2625 Query 10524 CAACAAACGGCATCGAACCACCTCGTGGCTACATGTCAG---TTAAGCAGTCGAAGGATG 10580 | || || || || |||||||| || || ||| |||| | ||||| || || || | Sbjct 2624 CGACCAATGGAATTGAACCACCCCGCGG--TCATATCAGCATTAAAGCA-TCAAAAGACG 2568 Query 10581 GCATCTTAAAACAAATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTACTAT 10640 | ||| || ||| |||| |||| ||||| ||||| ||||| | || | Sbjct 2567 GTATCCTACGCCAAGTCGTGCCGGAATATGAGCGCCTGAAAGATAGTTACGAAATGCTGT 2508 Query 10641 GGAATAT--CAAAGACAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTGT 10698 || |||| |||| | | || ||||| || | |||||| | |||||||||||| | Sbjct 2507 GGGATATGCCAAATA-ATGAC-GGTTATTTACAGCTGGTTGGTCTGATGCAGAAGTTTAT 2450 Query 10699 GGATCAGGCTATTTCAGCAAACACTAACTACGACCCAGAAAACTACCCAGAAAGTAAGGT 10758 || || || |||||| | ||||||||||||||||| | || | |||| || Sbjct 2449 CGACCAAGCAATTTCATCCAACACTAACTACGACCCGACACGCTTTGTTAATGGTAAAGT 2390 Query 10759 TCCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACACT 10818 || || ||| | || || ||||| || | || ||| | | ||| | || || || Sbjct 2389 ACCGATGAAACAACTACTGAAAGATCTGCTTACTGCTTACAAGTTTGGCGTAAAAACTCT 2330 Query 10819 GTACTACCACAACACACGAGATGGTGCTAGTGATGAACAGAAAGA 10863 |||||| || || || || || ||||| |||| ||| || || Sbjct 2329 GTACTATCAAAATACTCGGGACGGTGCGGAAGATGCACAAAACGA 2285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342206630382605