Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq66438 165 1e-35 seq157162 104 3e-17 >seq66438 Length=2923 Score = 165 bits (182), Expect = 1e-35 Identities = 363/540 (67%), Gaps = 19/540 (4%) Strand=Plus/Plus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||||||||| |||||||||||||| | || |||| || || || || || Sbjct 1074 ACAAGCAAAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAA 1133 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 |||||||||| ||| | |||||| | |||||| ||||| || ||||||| |||||| Sbjct 1134 GCCGGGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAA 1193 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTATTGCTCA 18335 ||| || |||||| || || || || | | |||| ||||| | | | ||| | | Sbjct 1194 TATGCCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGA 1253 Query 18336 GTATCCATTTTTGTGCCCATTC-TCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | |||||| | ||||||| || |||| || || || | || |||||| Sbjct 1254 G-ATCCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCA-GGGATCGTTTCAATAGCA 1311 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG-AATA 18453 ||||| | |||| ||| || || || || || | ||| || | ||| Sbjct 1312 TTAAATA--------NTTTC-----CATCCTTAATGTAGGTATC-AATAAGAATGCTATA 1357 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||| ||||| | ||||||| ||||| ||||| | |||||| | | || |||| Sbjct 1358 CATTTCTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGT 1417 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | ||| | || | || | ||| || | ||| |||||||| ||||| || | | Sbjct 1418 AATTTGTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGC 1477 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 ||||| || || ||||| | | | |||||| |||||| || | ||| ||| Sbjct 1478 GGCGAAGAAAGCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCA 1537 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 || || || ||||| || |||||||| ||||| |||||||| |||| ||||||||| Sbjct 1538 ATCGTCCATGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCTG 1597 >seq157162 Length=2207 Score = 104 bits (114), Expect = 3e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||||||| | ||||| || || || || || || ||||| || Sbjct 388 AATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGCCATC 447 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || ||| |||||| || ||||||||||| || || ||||| || Sbjct 448 GGACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGATCA 507 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | |||| ||||| || || | |||||| | ||| |||| || || | Sbjct 508 ACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTACA- 566 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 ||||||||| || | || |||||||| || || Sbjct 567 -ATATCCAAAAGGAATCAACACTTCATTTGGTATT 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730195144022000