Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq66438 149 1e-30 seq157162 147 4e-30 >seq66438 Length=2923 Score = 149 bits (164), Expect = 1e-30 Identities = 354/537 (66%), Gaps = 21/537 (4%) Strand=Plus/Plus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| ||||||||| ||||||||| || || | || || | ||||| || || || Sbjct 1074 ACAAGCAAAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAA 1133 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || ||||||| || | ||||| | |||||| || || |||||||||| |||||| Sbjct 1134 GCCGGGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAA 1193 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAAT---TTATCATC 49999 ||| || || || |||||||| || | | | | ||||| |||| || | || Sbjct 1194 TATGCCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAA-ATTAGCCGCTTTTGATG 1252 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 | ||||| || |||||||| || || || | | ||| || |||| ||||| Sbjct 1253 --AGATCCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGC 1310 Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGA-AT 50118 ||||||| || | || || | ||| || | || Sbjct 1311 ATTAAATANTTTCCATCCTTAATGTAGGTATC--------------AATAAGAATGCTAT 1356 Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178 ||||||| ||||| ||| |||||| ||||||||||| |||||| | |||||| | Sbjct 1357 ACATTTCTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGG 1416 Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238 | || ||||| | ||| |||||||||| ||| ||| ||||||||||| || | Sbjct 1417 TAATTTGTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGG 1476 Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 50298 | |||||||| |||||||||| | | ||||| |||||| || | | | | ||| Sbjct 1477 CGGCGAAGAAAGCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCC 1536 Query 50299 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGG 50355 || || | || || || | ||| || ||||||| |||||||| |||||| ||| Sbjct 1537 AATCGTCCATGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGG 1593 >seq157162 Length=2207 Score = 147 bits (162), Expect = 4e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||||||||| | ||||| ||||| ||||| | || | || || ||||| Sbjct 626 GTTCAATAATACCACCACGTAGACGCAATACCAAATGAAGTGTTGATTCCTTTTGGATAT 567 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || |||| || ||| |||| ||||||||||| || || || |||| | |||| Sbjct 566 TGTAGTCGGATAGAGTACGTCCATCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTT 507 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| ||||| || ||||||||||| || |||||| ||| ||||| || | || | Sbjct 506 GATCTGGTGGGATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTGTCCG 447 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | | || || || | ||| ||||| || ||||||| |||||||| || || |||||| Sbjct 446 ATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCATT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982167981023250