Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq157162 138 2e-27 seq66438 125 1e-23 >seq157162 Length=2207 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||| | || || ||||| ||||| | || | || || ||||| || Sbjct 621 ATAATACCACCACGTAGACGCAATACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAG 562 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || ||| | || ||||||||||| || || ||||||| | ||||| || Sbjct 561 TCGGATAGAGTACGTCCATCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCT 502 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||||||||| || |||||| ||| ||||| || || || || | Sbjct 501 GGTGGGATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTGTCCGATGGC 442 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || | ||| ||||| || ||||||| |||||||| ||| || |||||| Sbjct 441 TCGACCTCCAAAGTGATGGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCATT 388 >seq66438 Length=2923 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 ||||||||| ||||| ||| |||||| ||||||||||| |||||| | |||||| Sbjct 1355 ATACATTTCTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTC 1414 Query 39479 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 39538 | | || ||||| | ||| |||||||||| ||| ||| ||||||||||| || Sbjct 1415 GGTAATTTGTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGA 1474 Query 39539 TGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 39598 || |||||||| |||||||| | | | ||||| |||||| || | | | | | Sbjct 1475 GGCGGCGAAGAAAGCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTAC 1534 Query 39599 CCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGG 39657 |||| || | || || || | ||| || ||||||| |||||||| |||||| ||| Sbjct 1535 CCAATCGTCCATGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGG 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903062163711000