Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq114852 167 7e-36 seq112850 154 4e-32 seq182706 143 8e-29 seq79237 140 1e-27 seq32924 102 2e-16 seq181320 86.0 2e-11 seq145490 84.2 6e-11 >seq114852 Length=3422 Score = 167 bits (184), Expect = 7e-36 Identities = 725/1128 (64%), Gaps = 29/1128 (3%) Strand=Plus/Plus Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465 || || ||||| || || |||||||||| |||||||| ||| | || | |||| Sbjct 1558 TCTGCAAAACCTTGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGT- 1616 Query 155466 TTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATAC--- 155521 ||| | ||| ||| |||||| || ||||| ||||||| ||| | | ||| Sbjct 1617 TTCGGGCAATGGATAATGATTCACTTCGATAATTTTATTTAGATT---ACGCGTTACGGT 1673 Query 155522 CTTGGTTACGTCTGCTAA---TTTCACATAGTCAAATGTTTTATCCTCATTTACAAACAT 155578 |||||| || ||| ||| ||| | || || ||| || || | |||||||| Sbjct 1674 CTTGGTAACTTCTTTTAAGCGTTTGAAATCGT---ATGACTTTTCGGGTGTAACAAACAT 1730 Query 155579 ACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCT-- 155636 | || |||| || || | |||||| || || || | || |||| || || Sbjct 1731 ATTTAGCGCAATCGATGCTAAATTACAAACAGCTACTTCATC--CGGTGCTGAATACTCA 1788 Query 155637 ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTA 155696 ||||| || ||| | ||| || || |||||||| | ||| | || ||| || Sbjct 1789 ACAATTTCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTC 1848 Query 155697 CTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGA 155756 | ||||| ||||||||||| || |||||||| || || ||||| | || | || | | Sbjct 1849 CGATTACATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATA 1908 Query 155757 ATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATAT 155816 || | ||| || | || || | | ||| || | || || ||||||| Sbjct 1909 ATAGCAAACCAAAGACTTTGTGCTTTCACTGTCTTATTAGCGCGTCCCTCTTGCTCATAT 1968 Query 155817 TTCATATACAGC-GTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875 || |||| | ||||| | || ||||| | ||| ||| ||||| ||||| | Sbjct 1969 TTAGTATATAATTGTTCGA-ACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTG 2027 Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935 ||||| | |||||||||| || |||| | ||||| | |||||| | ||| Sbjct 2028 AGGGCACATCAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTAT 2087 Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCTTCCGT 155993 ||| | |||||| || | || || || | || || || | ||| ||| || ||| | Sbjct 2088 CCATAAAGCATAAAATAAATCTCTAGCACGATGT-TCTTCCTTGCCAGTGTTT-TTCTTT 2145 Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053 | || || || || | ||| | ||| ||| || | ||| || ||||| ||| Sbjct 2146 AAATCCAAAAACTCAAATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCA 2205 Query 156054 TTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 | || ||||| |||||||||||| || || |||||||| || | | ||| Sbjct 2206 GGACGTTTACCACCGCCCTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATT 2265 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 || | | |||||| || |||||||| || ||| ||| || || | ||| | | Sbjct 2266 GGTACCAAACCATTCGATGTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATA 2325 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 ||| | || |||||||||||||| | |||| |||||| || |||| | | | Sbjct 2326 CAATGTACATTGAGTCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCT 2385 Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAAT 156290 | | |||| || || ||||| ||||| | |||||| | ||| |||| || || | Sbjct 2386 GAAGTGAATATGCCATCAATCGAATCGGCGACCATTGTCAAGAGAAAGCAAGATGATAGT 2445 Query 156291 TGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTA 156350 || || | |||| | || ||| ||||| |||| ||||| ||||||| | Sbjct 2446 TGTGGCTGCCTTGTTGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCT 2505 Query 156351 GACATATAATCGTATGTCTCCTTAATCTTC-TCAAGATTAGACCCGTGAATACAGATAGA 156409 || | ||| |||||| || | || | || | || || || |||| || | Sbjct 2506 GAAAGTAAATTGTATGTTTCGAT-GGCTGCATCTATATCCTCGCCATGTATACCAATGGC 2564 Query 156410 GACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTA 156469 || | ||| |||||||||| |||||||| ||||| |||| | || || | ||| Sbjct 2565 AACACGCATTAACATATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTA 2624 Query 156470 TGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACG 156517 | |||||||| |||||||| || ||||||| | | ||| ||||| Sbjct 2625 AGAACGTTCCAGCGTTTTAAAACCAAAATAATTATAACCAAAGTCACG 2672 >seq112850 Length=8323 Score = 154 bits (170), Expect = 4e-32 Identities = 199/272 (73%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||| ||||||||||||||| || ||||||||||| ||| Sbjct 5313 TCCATAGCCTTTATGAGACGACGTTGAATATAACCAGTTTCAGCAGTTTTTACAGCAGTA 5254 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| ||||| | | ||| ||| | || Sbjct 5253 TCGATAAGACCTTCACGACCACCCATAGCGTGGAAATAGAATTCTGATGGTGTCAAGCCG 5194 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || | || ||||| ||||| | ||| || || ||||||| ||| | Sbjct 5193 GCAAGATATGAATTTTCGACGAAGCCACGTGACTCAGGACCGTAATCGTC---TTTGATG 5137 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||| ||||| | || | |||| ||||| ||||| || || |||||||||||| Sbjct 5136 AAATGTGGTAGGGTACGTTTACGAAAGCCATATGGTATACGTTTACCTTCAACGTTCTGC 5077 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| | || | ||| | ||| |||||||| Sbjct 5076 TGTCCTACACAAGCAATAACCTGTGAAATATT 5045 >seq182706 Length=1703 Score = 143 bits (158), Expect = 8e-29 Identities = 235/336 (70%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 289023 TTTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| | || || ||||||||||| ||||| ||||| | ||| |||| | ||| | | || Sbjct 74 TTTTCTTCCTACTGCATCAATTTCATCAATAAAAATAATACAAGGAGCACTTTTTTTAGC 133 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | | | ||| | |||||| | | || ||||||| |||||| | | |||| ||||||| Sbjct 134 AGTAGTAAACATTTCTCTAATTCTTGAAGCTCCAACTCCAACAAAAACTTCTTCAAATTC 193 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 |||| | || | | || ||| | ||| |||||| || || ||||| | || | | Sbjct 194 AGAACCAGAAATTGAAAAGAAAGGAACACCTGCTTCACCAGCAACTGCTTTTGCTAATAA 253 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 |||||||| || ||||| ||||| | | |||||||| ||||| ||| |||| |||| Sbjct 254 AGTCTTACCAGTACCAGGCGGTCCTACAAGAAGAACTCCTTTTGGCACTCTTGCACCCAT 313 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 | |||||| | || ||||||||| | |||| ||| || | ||| ||||| Sbjct 314 TTG-TGCATATTTTTGTGGAAACTTTAAAAAATGAACAACTTCTTCTAATTCCAATTTTT 372 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAATAT 289357 | || | | || || ||||||| ||| || ||| Sbjct 373 CTTCTTTAATACCAGCAACATCAGTAAATCTAGTAT 408 >seq79237 Length=4380 Score = 140 bits (154), Expect = 1e-27 Identities = 222/316 (70%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| ||||||||||||||||| ||||| | | ||||| | || | ||| || ||||| Sbjct 1965 ACCGACAGCATCAATTTCGTCGATGAACAAAATGCACGGTGCATGCTTTCTAGCCATTGC 1906 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | |||||| |||| || | ||||||| |||| |||| ||||||||| | Sbjct 1905 AAACATGTCACGTACACGTGATGGACCTACACCAACAAACATCTCTAGAAATTCAGAGCC 1846 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||||| || || | ||||| |||||||| ||| |||| |||| | || || || Sbjct 1845 GGATACGCTAAGAAAAGGCACATTCGCTTCGCCGGCTGTTGCCTTCGCTAATAGCGTTTT 1786 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||| || ||||| ||||| || | | || ||||||| ||| || || | | Sbjct 1785 ACCAGTACCAGGGGGTCCAGTCAACATTGCACCTTTTGGTATTTTAGCACCTAGATCAAT 1726 Query 289269 ATATTTCTCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||| | | ||| | ||||| |||||| |||| |||| || || ||| || || | Sbjct 1725 ATACTGTTGAGGATTTTTTAAGAAATTC-ACAAATTCCATAATCTCGATTTTGGCTTCCT 1667 Query 289328 CACATCCTGCTACATC 289343 | || || || ||||| Sbjct 1666 CGCAACCGGCAACATC 1651 >seq32924 Length=7297 Score = 102 bits (112), Expect = 2e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 233260 TAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAG 233319 ||||||| || |||||| |||| ||| ||||||||||||||| ||||||| ||| | Sbjct 5222 TAAAAATTGTGCAGCACCATGAGATATCTGACAATCACGTTCCATCTCACCAAAACGTAA 5163 Query 233320 ACCACCATCATTTGACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCCT 233378 |||||||||| | |||||||| | | ||| || | ||| | || | |||||| Sbjct 5162 ACCACCATCACGCGCCCTACCCTCCATAGGTTGGCGCACCAAAATCTGTAC-TGGACCGC 5104 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAG 233418 | ||||| ||| ||||||||| | ||||||||||| || Sbjct 5103 GTGCACGTGAATGAATTTTATCATCCACCATATGCTTGAG 5064 >seq181320 Length=1136 Score = 86.0 bits (94), Expect = 2e-11 Identities = 124/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 303615 TGATTCTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATA 303674 || ||| ||| ||| || | |||||||||||| || ||||| ||||||||||||||||| Sbjct 170 TGCTTCCTCAGTTTGTGGTAAATGTAAATTCATTTCGTCACCATCAAAATCAGCATTATA 111 Query 303675 CGGCTTTGTGTCCGCAA-CGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTT 303733 || | || | |||| |||| | ||||| ||| | ||| || |||| Sbjct 110 GGG-TGTGCATGCGCACTCGTTAAAACGGAATGTA---CGTTGCGGTTGCACTTTAGCTT 55 Query 303734 TATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCAC 303785 ||||||||| ||||||||| | || || | || ||||||||||| || || Sbjct 54 GATGACACATAATAGACATTTTATGCAGCGAAGGTTGACGATTGAATAGTAC 3 >seq145490 Length=3835 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | | ||| | |||||||||||||||||||| | ||| |||||||| ||| Sbjct 1728 GCACCATAGGAAATGAGGCAATCACGTTCCATTTCACCCAAACGTAGACCACCTTCAC-- 1671 Query 233333 GAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | |||||| || |||||| |||| |||| |||| || | || || || Sbjct 1670 GACTACGACCCTGCGTTGGTTGACGTGTTAGCACAGCCTTTGGGCCACGTGCTCGCGCAT 1611 Query 233391 TAATTTTATCTTTAACCATATGCTTCA 233417 |||||||||| ||||||||||||| Sbjct 1610 GCATTTTATCTTGCACCATATGCTTCA 1584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468361084660415