Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq183044 123 3e-23 >seq183044 Length=3031 Score = 123 bits (136), Expect = 3e-23 Identities = 213/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 43395 TTGCCCGATATGAAGAACAAAAACACAGTGTATTTGAAAAGCTGACTGAAAAACAACTGT 43454 |||| || | ||| |||||||| | | | |||||||| || | |||||||||||| | Sbjct 2089 TTGCACGCTTTGACCAACAAAAATATGGCATTTTTGAAAAACTAATTGAAAAACAACTTT 2030 Query 43455 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATTGACCGTATGCAGTATGCGAAAA 43514 | || |||||||| || |||||||| ||| | || ||| || || | ||| Sbjct 2029 CTTTTTTCTGGCGCCCAGAAGAAGTTGATGTATCACGTGATCGCATCGATTATCAAGCCT 1970 Query 43515 TGCCGGAACATGAAAAAATCATTTTCGATTCTAACCTGCAATATCAAACCCTACTGGATA 43574 || | ||||||||||| ||||||| ||| || |||||||||| || ||||| Sbjct 1969 TGGCTAAACATGAAAAACACATTTTCATCAGTAATTTGAAATATCAAACTCTGTTGGATT 1910 Query 43575 CCATTCAGGGACGCGGCCCTAACCTTGCATTTCTCCCGATTG-CCTCTGATGTATCAA-T 43632 | || || ||||| | || ||| | ||||| || || |||| |||| || | || | Sbjct 1909 CTATCCAAGGACGTAGTCCAAACGTAGCATTGCTACC-ATTGATCTCT-ATTCCTGAACT 1852 Query 43633 GGAAACGTGGATCGAAACATGGGCGTTCAGTGAAACAATTCACAGTCGCAGTTATACGCA 43692 |||||| ||| | ||||| ||||| ||| |||||| || || || ||||||||| Sbjct 1851 GGAAACTTGGGTGGAAACCTGGGCATTCTCTGAAACCATCCATTCCCGATCTTATACGCA 1792 Query 43693 CATT 43696 ||| Sbjct 1791 TATT 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562506632153400