Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq183157 172 8e-38 >seq183157 Length=4427 Score = 172 bits (190), Expect = 8e-38 Identities = 219/298 (73%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 98895 ATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGAAA--GGTACGCCGAAGAAAG 98952 ||||||||||||| || |||||| | | | | || |||| ||||| | || || | Sbjct 2924 ATGAAACAGTATCTGGAATTAATG-CAGTA-TGTTCTCGAACATGGTACAGCAAAAAATG 2981 Query 98953 ACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAG 99012 |||| || |||| || || || ||| | || || || || ||||| || || || | | Sbjct 2982 ACCGCACTGGTATTGGGACTCTGTCTGTTTTTGGTCATCAAATGCGGTTTAATTTACGTG 3041 Query 99013 AAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTGC 99072 |||| || ||||| ||||| ||||| |||||||| | ||| || || |||||| || Sbjct 3042 AAGGCTTTCCGCTAGTAACCACCAAAAAATGCCACCTACCCTCCATCATTCATGAATTGT 3101 Query 99073 TGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATTT 99132 | |||||||| | ||||| || |||||| || |||||||| ||| || | |||| Sbjct 3102 TATGGTTCCTCACTGGCGATACTAATATCGCTTATCTGAAAGAGAATAAAGTTTCTATTT 3161 Query 99133 GGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||| ||||||||| | ||||||| ||||||||||| ||||| || || || ||||| Sbjct 3162 GGGATGAATGGGCGAATGAAAATGGTGACCTCGGTCCAGTATATGGAAAACAATGGCG 3219 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 99714 TGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGTACTCAGTTA 99773 |||| ||||||||| | ||| ||||| ||||| || |||||||||||| || || Sbjct 3524 TGGATTGGCGGTGATATTCATTTGTATAGCAACCACCTTGAACAGGCACGTCTGCAACTA 3583 Query 99774 GGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTATCTTC 99833 ||| || ||| || |||| ||| | || |||||||| || | ||||| ||| Sbjct 3584 ATGCGTGAGCCACGTACGCTGCCACTACTGGTGATGAAACGTAAACCAGTATCTATTTTC 3643 Query 99834 GACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTAAAGCA 99893 |||||| ||||| ||||| || | || || || || |||||||| |||||||| Sbjct 3644 GACTATCGTTTCGATGATTTCACAATTCAGGGTTATGATCCCCACCCGGCAATTAAAGCG 3703 Query 99894 CCGGTGGCGATATGA 99908 | || || || ||| Sbjct 3704 TCAGTAGCTATTTGA 3718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714994850721800