Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq182590 104 1e-17 >seq182590 Length=1585 Score = 104 bits (114), Expect = 1e-17 Identities = 206/305 (68%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 12341 GCTACTGAAGGTTCTGCTGGTGTAGACTTACGCGCTAACACCTCTGAACCATTTGAATTG 12400 |||||| ||||||||||||| | || |||| ||| | | |||||| | || | Sbjct 1160 GCTACTTCAGGTTCTGCTGGTCTGGATCTACGAGCTTGCCTATATGAACCTTATGTTCTA 1101 Query 12401 AAACCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCATCTGGACGATGTACAT 12460 || ||||||| || | | | | ||| || | ||||| || | | || | Sbjct 1100 CAAGCAGGTGATACTACGCTGGTGTCAACAGGACTAGCTATCTATATCGCTGACCCGCGG 1041 Query 12461 GTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTGCTTGGG 12520 ||||||||| | || || || || || ||||| || || ||||||||| | || || || Sbjct 1040 GTAGCTGCAGTTATCCTGCCGCGCTCTGGTCTTGGTCACAAACATGGTATCGTACTGGGT 981 Query 12521 AACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTCTGGAAT 12580 ||| | |||| |||||||| || ||||||||||| ||| | ||||| | ||||| Sbjct 980 AACTCTGCTGGACTGATTGACTCTGATTATCAGGGAGAATTGATGGTTTCTGTATGGAAC 921 Query 12581 CGCTCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTAATCGTG 12640 || | ||| |||||||| | | || || || || || || || |||||| | | Sbjct 920 CGTGGTCAAGATTCTTTTACTATCGAGCCGGGCGAGCGCATCGCACAAATGGTATTTTTA 861 Query 12641 CCTGT 12645 ||||| Sbjct 860 CCTGT 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231018769920725