Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq182810 86.0 3e-12 seq182590 86.0 3e-12 >seq182810 Length=1907 Score = 86.0 bits (94), Expect = 3e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 63027 GCATCCTTAGCTCAGTTGGATAGAGCAGTAGCCTTCTAAGCTATTGGTCACTGGTTCGAA 63086 || |||||||||||||||||||||||| ||||||||||| | |||||| |||||||| Sbjct 1675 GCGTCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 1734 Query 63087 TCCAGTAGGGTGTACCA 63103 ||| ||||| | |||| Sbjct 1735 TCCTGTAGGACGCACCA 1751 >seq182590 Length=1585 Score = 86.0 bits (94), Expect = 3e-12 Identities = 202/305 (66%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 7900 GCTACTGAAGGTTCTGCTGGTGTAGACTTACGCACTAACACCTCTGAACCATTTGAATTG 7959 |||||| ||||||||||||| | || |||| || | | |||||| | || | Sbjct 1160 GCTACTTCAGGTTCTGCTGGTCTGGATCTACGAGCTTGCCTATATGAACCTTATGTTCTA 1101 Query 7960 AAACCAGGTGAAACCAAGTTAGTTGAAACTGGTTTGGCTATTCATCTGGATGATGTGAAG 8019 || ||||||| || | | | || ||| || | ||||| || | | ||| | | Sbjct 1100 CAAGCAGGTGATACTACGCTGGTGTCAACAGGACTAGCTATCTATATCGCTGACCCGCGG 1041 Query 8020 TATGCAGCAATGATTCTTCCTCGTTCAGGTCTGGGCCATAAGCATGGTGTAGTGCTTGGG 8079 || ||| | || || || || || ||||| || || || |||||| | || || || Sbjct 1040 GTAGCTGCAGTTATCCTGCCGCGCTCTGGTCTTGGTCACAAACATGGTATCGTACTGGGT 981 Query 8080 AACCTTACTGGTCTGATTGATTCAGACTATCAGGGTGAACTTATGGTAAGCCTCTGGAAT 8139 ||| | |||| |||||||| || || |||||||| ||| | ||||| | ||||| Sbjct 980 AACTCTGCTGGACTGATTGACTCTGATTATCAGGGAGAATTGATGGTTTCTGTATGGAAC 921 Query 8140 CGCTCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTAATCGTG 8199 || | ||| |||||||| | | || || || || || || || |||||| | | Sbjct 920 CGTGGTCAAGATTCTTTTACTATCGAGCCGGGCGAGCGCATCGCACAAATGGTATTTTTA 861 Query 8200 CCTGT 8204 ||||| Sbjct 860 CCTGT 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230073685878205