Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq114852 347 1e-90 seq157162 109 5e-19 >seq114852 Length=3422 Score = 347 bits (384), Expect = 1e-90 Identities = 1162/1790 (65%), Gaps = 49/1790 (3%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 |||||| || ||||| | ||| |||| || |||||||| || | | ||||||||| || Sbjct 825 TTTATCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATAATACATGCC 884 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||||| | ||| || ||| | | | |||||| || || ||| | || | || Sbjct 885 AGTTTTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATGTAAGTTTGCCATAGTTTGG 944 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | | || ||||||||||| || ||||| || || ||||| ||||| || Sbjct 945 TTCAGCTACATGAATATTAAACGATTGGCTTTGATCAATAAATGCGCCACGATCGGCTGC 1004 Query 138333 CATGTTAATTAAATT-TTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 ||| || ||| | | ||||| | ||||||||||| |||||||| || ||||| || | Sbjct 1005 CATCTTCATTGTAGTCTTTACCGAT-ATCTCCCACACAGTCTTGTAAAGTTCACGTATTT 1063 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CGTTGGCCGCAATGATGCGATTTCT 138449 | ||||||||||| ||||| ||| || | || || | | || || | || | Sbjct 1064 TTTGCGGTATTGTTTCAATACCTTGTATTGAACCACGACTG--GTTATAATTTTAGTTTT 1121 Query 138450 CATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGAC 138509 ||| ||||| | ||| | ||| | | | | ||| || || || || | || Sbjct 1122 CATTTCATCATCCCACAAACCCAATTCGGTAAGATCGCGTAACAAATGATGATTAACAAC 1181 Query 138510 CTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGA 138569 ||||||||||| | | ||| |||||| ||||| || || |||| ||||| || Sbjct 1182 TTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAAGGTTCAAAAGA 1241 Query 138570 TTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGA 138629 ||| ||||| |||| ||| ||||| || | || || |||||| |||| | | || Sbjct 1242 TTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCAAAAGTAAGGA 1301 Query 138630 ATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCT 138689 || |||| || || |||| ||| || || | | ||||||||| | |||| | Sbjct 1302 GTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCCCATAGATCGGT 1361 Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749 |||||||| ||||||||||| || || | || || || | || ||||||||| Sbjct 1362 TGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGTGAGCCTTCGTA 1421 Query 138750 CGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTA 138809 | || || |||| | | || ||||| || || || || | || |||||||| Sbjct 1422 TGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAATGCGCCATAGTA 1481 Query 138810 AATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCG 138869 || |||||| ||| || ||||| | | | |||| |||||||||| || || Sbjct 1482 CATTGTTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGCTCTCGTATGGGTAACG 1541 Query 138870 GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAG 138929 | | | || || || || | ||||| ||||| | |||| |||||||| | | Sbjct 1542 CATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGGCGATGTCTGAA 1601 Query 138930 ATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGATTTTGTTTAA 138986 ||||| ||| | |||| | ||||||| || || ||||| ||||| |||| Sbjct 1602 GTTTGA---TTTCTTTGTTTCGGGCAATGGATAATGATTCACTTCGATAATTTTATTTAG 1658 Query 138987 ATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTT 139046 ||| ||| || ||| || | ||||| |||| |||||||||| || Sbjct 1659 ATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAATCGTATG------ACTT 1712 Query 139047 GTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCAC 139106 ||| | || ||||| | || | |||||| |||| || || || || || Sbjct 1713 TTCG-----GGTGT-AACAAACATATTTAGCGCAATCGATGCTAAATTACAAACAGCTAC 1766 Query 139107 TTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 ||| || || |||| || || |||||||| | || ||||||||||| || || || Sbjct 1767 TTCATCCGG--TGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATTTAATGGTG 1824 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || | |||||||||||| || || || ||||| ||||| ||||| ||||| || |||||| Sbjct 1825 CCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTATGGTGTG 1884 Query 139225 CCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAACAAGTCCCTAGCTTGT-ATTTGAC 139282 || || || ||||| | || ||||| | | ||| | || |||| ||| || Sbjct 1885 CCGGTCTCTACTTGCGATTCAATAATAGCA----AACCAAAGACT---TTGTGCTTTCAC 1937 Query 139283 GCACGTA-AAGTTCGTCGC----GCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACC 139337 | || || |||| | |||| || || || | || ||||| ||||| Sbjct 1938 TGTCTTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAACTCATCACC 1997 Query 139338 GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGC 139397 | | ||| ||| | ||||||||| ||| ||||| |||||||| | | || || Sbjct 1998 CCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTTCATTAGC 2057 Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 | || || |||| || ||||| || ||||| ||||| | | ||||| | || Sbjct 2058 TTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAATAAATCTCTAGCACG 2117 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 | |||||| || |||| || | | | || ||||| || || || ||||| Sbjct 2118 ATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACTCAAATACATCTGCATGCCA 2177 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCA---CCTTGATCGACGTGTCG 139574 |||||| | |||||| || | ||||| ||||| ||| || ||||| || | || Sbjct 2178 TGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCCCTGATCTACATAACG 2237 Query 139575 TACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCT 139634 | | ||||||||||||| | |||||| || ||| ||| ||| ||| || || || | Sbjct 2238 TGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCGATGTGCCATTTGTAC- 2296 Query 139635 ACGG--ATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCA 139692 ||| || | || | ||| || | ||||||||||| || || || || | Sbjct 2297 -CGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTGAGTCCAATACCACCAGCT 2355 Query 139693 AATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCC 139752 ||||||| ||||| | || | || || | |||| || || ||| | Sbjct 2356 GATTTGGAAATTAATGCACATTGATGTGCTGAAGTGAATATGCCATCAATCGAATCGGCG 2415 Query 139753 TGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGA 139812 ||| || | |||||||| || || ||||| || | | || |||| || ||||| Sbjct 2416 ACCATTGTCAAGAGAAAGCAAGATGATAGTTGTGGCTGCCTTGTTGCGGCAGCGAACAGT 2475 Query 139813 GTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTC 139872 || || || ||||| || ||| || | || | ||| ||||||||||| Sbjct 2476 GTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGTATGTTTCGATGGCTGCA 2535 Query 139873 ACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | |||||| || || ||||| | | || ||||| | |||||| || Sbjct 2536 TCTATATCCTCGCCATGTATACCAATGGCAACACGCATTAACATATGCTG 2585 >seq157162 Length=2207 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || ||||||| ||||| || || || || || | || || || ||| Sbjct 386 ACAATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGA-GCC 444 Query 24761 ACCG-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | || |||| | |||| || ||| || || || || |||||||| || || || || Sbjct 445 ATCGGACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGA 504 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 |||||||||| | || || ||||| ||||| |||| ||| | | | || || || Sbjct 505 TCAACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTA 564 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||||||||| ||||| || ||||| ||||| Sbjct 565 CAATATCCAAAAGGAATCAACACTTCATTTGGTATTGCG 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448866800242600