Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq183044 410 2e-109 seq183288 89.7 9e-13 >seq183044 Length=3031 Score = 410 bits (454), Expect = 2e-109 Identities = 746/1085 (69%), Gaps = 25/1085 (2%) Strand=Plus/Minus Query 71289 TAAAAACGATCAGATGGCTGAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTA 71348 |||||| |||||| || ||||| ||||| | |||||| |||||||| | |||| | Sbjct 2139 TAAAAATGATCAGCTGATGGAACCTATGTTTTTCGGTCAGCCGGTTAACATTGCACGCTT 2080 Query 71349 TGATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTG 71408 ||| || || || || | || ||||| || ||||| ||||||||||| || ||||| Sbjct 2079 TGACCAACAAAAATATGGCATTTTTGAAAAACTAATTGAAAAACAACTTTCTTTTTTCTG 2020 Query 71409 GCGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCA 71468 ||| || ||||| || ||||| || | || || ||||| | || | ||| | | || Sbjct 2019 GCGCCCAGAAGAAGTTGATGTATCACGTGATCGCATCGATTATCAAGCCTTGGCTAAACA 1960 Query 71469 TGAAAAACACATCTTCGTTTCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGG 71528 |||||||||||| ||| | ||| ||||||| ||||| ||| |||| || || || || Sbjct 1959 TGAAAAACACATTTTCATCAGTAATTTGAAATATCAAACTCTGTTGGATTCTATCCAAGG 1900 Query 71529 TCGTAGCCCGAACGTGGCCTTGCTGCC---GATCTGTTCTATCCCGGAACTCGAAACCTG 71585 ||||| || ||||| || ||||| || ||||| |||| || ||||| ||||| || Sbjct 1899 ACGTAGTCCAAACGTAGCATTGCTACCATTGATCT---CTATTCCTGAACTGGAAACTTG 1843 Query 71586 GATTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTCATACACCCACATCATCCG 71645 | | ||||||||||| ||||||||||| || || || || || || || || || || || Sbjct 1842 GGTGGAAACCTGGGCATTCTCTGAAACCATCCATTCCCGATCTTATACGCATATTATACG 1783 Query 71646 TAATATCTTTACTGACCCCTCCATCGTGTTTGATGACATCGTGACCAACGAACACATCAA 71705 ||||||| ||| |||||| | | || || ||||| || | || |||||||| ||| Sbjct 1782 TAATATCGTTAATGACCCAGCACTAGTTTTCGATGATATTATCACTAACGAACAAATCCT 1723 Query 71706 AGCGCGTGCTGAGTCCGTCACGGAGTATTACGACCAGCTGATCGAAATGACCATGTACCT 71765 ||||||| | || | | || || ||| | || ||||||||||||| ||| Sbjct 1722 TTCGCGTGCCAAAGATATCTCTGGTTACTATGACGATCTAATCGAAATGACCAGCTACTG 1663 Query 71766 CAACTTACTGGGTGAAGGTACTCATGTAATCAATGGTAAGAAAGT---CGTGGTCTCGAT 71822 | | | || |||||| || | | | ||||| | | ||| || | Sbjct 1662 GTATCTGTTAGGAGAAGGTGTGCACAAAGTGGACGGTAAAACTATTACCGTTAACT---T 1606 Query 71823 GCGTGCTATCAAGCGTCTGGTCTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCAT 71882 ||| || | || | | | || | ||| || || ||||| | ||| ||||| || Sbjct 1605 GCGGGCGCTAAAAAAGCAGCTTTATATATGCCTCATGAGTGTCAATGCGTTAGAAGCAAT 1546 Query 71883 CCGCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGG 71942 || || || || |||||||| || || || || || || ||||| |||||||||| Sbjct 1545 ACGTTTTTACGTGAGTTTTGCCTGTTCTTTCGCTTTCGCAGAGCGCGAATTGATGGAAGG 1486 Query 71943 CAACGCCAAGATCATTAAACTGATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCA 72002 || || || |||||||| || || || ||||| ||||| | || ||||||| || || Sbjct 1485 TAATGCTAAAATCATTAAGCTTATTGCTCGTGACGAAGCGTTACACTTGACCGGAACTCA 1426 Query 72003 GCA---CATGATCATGTTAATGAAGTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGT 72059 ||| | | | | |||| | | || ||||| || ||| || ||||| ||||| | Sbjct 1425 GCATATCTTAAACTTGTT-ACGTAG--CGGTGAAGATGATCTAGAAATGGCTGAAATTGC 1369 Query 72060 TAAAGAGTGTGAAGCAGAAACATACGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGA 72119 ||||| || ||| ||| |||||| || || ||||||| ||||| Sbjct 1368 CAAAGAATGCCGCCAAGAGTGTTACAATCTCTTTGTTTTGGCAGCGCAGCAGGAAAAAGA 1309 Query 72120 CTGGGCGAACTATCTATTCCAGGACGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTG 72179 ||||| | ||| | || | ||| || ||||| ||||||||||| || || |||| Sbjct 1308 GTGGGCTGAATATTTGTTTAGCGGCGGTTCCATGATTGGTCTGAACAAGGATATTTTGTG 1249 Query 72180 CCAGTACATCGAATACATCACCAACATCCGTATTCGCGCCATCGGTTACGA--TGACATC 72237 |||||||| || || ||||| || ||||| || || | | | || || | | Sbjct 1248 GCAGTACATTGAGTATATCACTAATATCCGCATGAATGCGGTTGATCTTGATCTGCCCTT 1189 Query 72238 TACGCCGGTGTCAAAGCTAACCCAATCCCATGGATCAACTCCTGGTTGGTTTCTGACAAC 72297 | | | || | | ||||| ||||| |||||||| || ||| |||| ||||| ||| Sbjct 1188 CAAGAC-----CAGATCAAACCCGATCCCTTGGATCAATTCTTGGCTGGTGTCTGATAAC 1134 Query 72298 GTGCAAGTCGCTCCACAGGAAGTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTCG 72357 |||||||| || ||||||||||| ||||| || || ||||| ||||| ||||| || || Sbjct 1133 GTGCAAGTTGCACCACAGGAAGTTGAAGTTAGCTCCTATCTAGTCGGGCAGATTGATTCT 1074 Query 72358 AAAGT 72362 |||| Sbjct 1073 GAAGT 1069 >seq183288 Length=12247 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 11948 TCTGTAGTTCAGTAGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 12007 Query 165254 GCTAGACCAGCCAA 165267 | ||| |||||| Sbjct 12008 GTCAGAGGAGCCAA 12021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 865353559600800