Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq183044 84.2 3e-11 >seq183044 Length=3031 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 30745 GCAATGTCAACCATTTCCGAGTCATCATCGCCGTTCTGCCAAGCACGAATGAGATA--CT 30802 ||||| ||| ||||||| ||||| || ||| || | | || | | ||||| || Sbjct 1369 GCAATTTCAGCCATTTCTAGATCATCTTCACCG--CTACGTAACAAGTTTAAGATATGCT 1426 Query 30803 GAGTCCCTTTCAAGTGCAATTGTTCGTCGCGAGCGATCAAGCGCA-TGATCTTGGCGTTA 30861 |||| || ||||||| || |||||| ||||| || |||| | |||| || || ||| Sbjct 1427 GAGTTCCGGTCAAGTGTAACGCTTCGTCACGAGCAAT-AAGCTTAATGATTTTAGCATTA 1485 Query 30862 CCTTCCATCAAACCACGCTCACCAAATGAGAATGTGCAAGCAAAGCTAACATAGAAACGC 30921 ||||||||||| | ||||| | || | ||| | || ||||| || || || ||||| Sbjct 1486 CCTTCCATCAATTCGCGCTCTGCGAAAGCGAAAGAACAGGCAAAACTCACGTAAAAACGT 1545 Query 30922 ATTGCCTC 30929 ||||| || Sbjct 1546 ATTGCTTC 1553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708663789681200