Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq183228 141 9e-29 >seq183228 Length=5652 Score = 141 bits (156), Expect = 9e-29 Identities = 270/393 (69%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 26332 ATCAAACTCAACAACACCAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGC 26391 |||||| || ||||||||||||| ||| || || |||| ||||| ||||| | | | || Sbjct 1403 ATCAAATTCCACAACACCAAATCGTTCTGGGTCTATTACTTGATATCCAAATACAGTCGC 1462 Query 26392 TCCACCATTCTTTTCAA-TATGTTCTTTAGCAGAATCTAAAATGCTACCAAAACTCTGAC 26450 ||| | ||| |||||| ||| | ||| || | || | | ||| | |||| Sbjct 1463 TCCTCTATTTTTTTCAGCTATCTGCTTCAGT----TTTAGACT------AAAGCCTTGAC 1512 Query 26451 CAAAGAATAAATTATCACCTAGCA-CAAGTGCTACAG-AATCTTCACCAATAAAGTTCTC 26508 ||||||| | ||||||||| || | ||| || |||| ||| || | ||||| | || Sbjct 1513 CAAAGAAAATATTATCACCCAGTATCAA--GCAACAGCTGTCTCCATCGATAAACTCTTC 1570 Query 26509 ACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGA 26568 ||| || ||||| || | ||| ||||| |||||| ||| |||| || || Sbjct 1571 ACCTATGATAAATGCCTGTGCCAAACCACACGGGCTAGGCTGCCTTGCGTATCTCAGACG 1630 Query 26569 AATACCAAAAGAAGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGT 26628 || ||||| | |||| ||| || | | | | ||| |||||| ||||| || Sbjct 1631 AAGGCCAAATTCATCGCCATTACCCAGCAACTGTTGATAATGTGGTTGATCATCTGGCGT 1690 Query 26629 TGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAAT 26688 ||||| || | || || | ||||| | |||||| || || || | |||||| ||||| Sbjct 1691 AGTAATAATAAAAATATCGCGGATTCCCGCAAGCATGAGTACTGATAATGGATAGTAAAT 1750 Query 26689 CATAGGTTTATCGTAAATTGGTAATAGTTGTTT 26721 ||| || |||||||||| || ||||| ||||| Sbjct 1751 CATCGGCTTATCGTAAACAGGCAATAGCTGTTT 1783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 210/312 (67%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 27118 TGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGATTGGT 27177 || || |||||||||| |||||| | | || | ||||| || ||||| || | || Sbjct 2247 TGGTCCTCAACGTATAGCCAGTCCCGGATCTGCATACCATCGCCGTAAACCGGCAGCGGC 2306 Query 27178 TTATGCATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATGATATGCT 27237 ||| || || || ||| || || |||| ||||||||| || || | Sbjct 2307 TTACCACCCAACGCGTTGGTAATCATTCGTGGAATTAATTTTTCTGGGAAGTGGTACGGA 2366 Query 27238 CCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCACGCT 27297 ||| | || || ||||| || || | || ||||| ||| |||||||| | ||| || Sbjct 2367 CCATAGTTGTTAGAACAGTTCGTGACAATGACCGGAAGACCGTAAGTACGGTACCAAGCG 2426 Query 27298 CTTACCAAATGATCGCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGTTTATAAGGA 27357 | |||||||||||||| |||||| | || | ||| || ||| ||||| |||||| Sbjct 2427 CGAACCAAATGATCGCTACTAGCTTTCGTCGCTGAATAGGGGCTATTTGGTACATAAGGC 2486 Query 27358 TTCTGTTCTGTAAACGGAT-AATCTCCTTCTTCCAGATCACCATACACTTCATCTGTTGA 27416 | ||| || || || | |||| || || || |||||| | |||||||| || || Sbjct 2487 GTACTTTCAGTGAAAAAATCATTCTCATTTTTTAAG-TCACCAAAGACTTCATCAGTAGA 2545 Query 27417 AATATGATGGAA 27428 | ||| |||| Sbjct 2546 TACATGGAGGAA 2557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474341099810400