Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq182942 217 5e-51 seq182262 143 8e-29 seq183188 141 3e-28 >seq182942 Length=2376 Score = 217 bits (240), Expect = 5e-51 Identities = 362/519 (70%), Gaps = 27/519 (5%) Strand=Plus/Plus Query 69268 TATTTCTATGTAATGCATAGATTTGAACCCGAGACTAGACTTGATTTTATTAAAGATATG 69327 || || ||||||||||| | ||| | ||| | | || | ||||||||| |||| Sbjct 1862 TACTTTTATGTAATGCACCGTTTTAATATCGA---TCAAATTAAATTTATTAAAAGTATG 1918 Query 69328 CAAACTCGCAACTTATATGCTTCTATTAGTGTTGGTGTAAAAGAAGAAGAGTATCAATTT 69387 || | || ||||||||||| ||||| ||||||| ||| |||| || | | || Sbjct 1919 CATGAACAAAAGTTATATGCTTCAATTAGCATTGGTGTTAAAAAAGAGGATAAAGAGTTA 1978 Query 69388 ATTAATCAATTAGCTGATGAAA----AACTTGTTCCAGAATATATCACTATTGATATAGC 69443 || | |||||| || ||| | || ||||||||| ||| ||||||||||| || Sbjct 1979 CTTGAACAATTA----ATCAAACTGAATCTAATTCCAGAATTTATTACTATTGATATTGC 2034 Query 69444 TCACGGACATTCTAATGCTGTTATTAAAATGATTCAACATATAAAGAAGATGTT------ 69497 || || ||| ||||||| | |||||||| || |||||| | | || Sbjct 2035 ACATGGTCATAGTAATGCTATGGAAGAAATGATTAAATTTATAAAAACTACTTTTGCTAA 2094 Query 69498 ACCAAATAGT------TTTGTTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGA 69551 | |||||| | ||| ||||||||||||| ||| ||| |||||| || Sbjct 2095 AACAAATACTAAACCTTTTATTATTGCTGGTAACGTTATGACAAAAACCGCTGTTAAAGA 2154 Query 69552 ACTTGAAAATGCAGGCGCAGATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTAT 69611 | ||||| |||||| ||||| | ||| ||||| |||||||||| |||| ||||| Sbjct 2155 TTTAGAAAAATGAGGCGCTGATGCAATTAAATTTGGTGTTGGCCCAGGAAAAGCTTGTAT 2214 Query 69612 TACTAAAATCAAAACTGGTTTTGGTACTGGCGGCTGGCAGTTAGCTGCATTGC--GTTGG 69669 ||||||| | |||||||| |||||||| || || || || ||| ||| || | | || Sbjct 2215 TACTAAACTAAAAACTGGATTTGGTACAGGTGGTTGACAATTAAATGCTTTACAAGATGT 2274 Query 69670 TGTTCAAAAGTAGCTACTAAACCAATAATTGCTGATGGTGGTATTCGTACTAACGGTGAT 69729 || ||| || | | ||||||||| ||||||| |||||||||||| | ||| |||||| Sbjct 2275 TG-CCAATAGCA-CCACTAAACCATTAATTGCAGATGGTGGTATTAGATGTAATGGTGAT 2332 Query 69730 ATTGCTAAATCTGTACGTTTTGGCGCTTCAATGGTTATG 69768 ||||||||| | || |||||| || | ||| ||||| Sbjct 2333 ATTGCTAAAGCAATAGCTTTTGGTGCCACTATGATTATG 2371 >seq182262 Length=1383 Score = 143 bits (158), Expect = 8e-29 Identities = 280/410 (68%), Gaps = 23/410 (6%) Strand=Plus/Plus Query 180782 TTTACCAGGGAAATTAGCTGATTGTACTTCTAAA------ACTTATTCTGAACTATATAT 180835 |||||| || |||||||| |||||| |||||||| ||| | | ||| | | | | Sbjct 863 TTTACCTGGTAAATTAGCAGATTGTTCTTCTAAAGATCCAACTAAAACAGAAGTTTTTCT 922 Query 180836 TGTAGAAGGTGATTCTGCTGGTGGTTCTGCTAAGTCCGGAAGAAATCGTTACTACCAAGC 180895 ||| |||||||| || |||||||| |||| |||| ||||||| | | | ||||| Sbjct 923 TGTCGAAGGTGAGTCAGCTGGTGGAACTGCAAAGTTGGGAAGAAGTAGAGAAATTCAAGC 982 Query 180896 AATATTATCATTACGTGGCAAAATCTTAAACGTGGAGAAA--AGTAGTTTAGAAAGAATG 180953 ||| ||| ||||| | || ||||| | || || || ||| | | ||| |||| | Sbjct 983 AATTTTACCATTAAGAGGGAAAATAATTAATGTTGAAAAAGCACGACTTTTAAAAGTTTT 1042 Query 180954 CT-TAACTCTGAAATGATTAAGAATATCATAGGTGCAGTTGGTACTGGCATTGATTCGCC 181012 | | || ||||| | ||| ||| || | | ||||| ||| ||| | Sbjct 1043 TTCTGACGAAGAAATAAATAATCTTATTAT---TTCCTTTGGTTGTGGTGTTGGT----- 1094 Query 181013 AGGACAAAAGTTCGAATATGAA-AAATTGCGATATGATAAAATTATTTTCATGTGTGATG 181071 | | || || ||||| | ||||| || ||| ||||||||||| | ||| ||||| Sbjct 1095 ---AAAGAATTT--AATATTACTAAATTACGTTATCATAAAATTATTATTATGACTGATG 1149 Query 181072 CTGATGTCGATGGTTCTCATATTGAAGCACTACTACTAACGTTATTCTATAATTATATGA 181131 ||||||| || ||||| |||||| || || || || |||| || || ||| ||| ||| Sbjct 1150 CTGATGTTGACGGTTCACATATTAAAACATTATTATTAACATTTTTTTATCGTTACATGC 1209 Query 181132 GACCATTAATTGAAAAAGGGCATGTATATGCGGCTCAGCCACCATTATAT 181181 | || |||||||| || || ||||| |||||||| || |||||| Sbjct 1210 GTCCCTTAATTGATGCTGGTTATATATATATAGCTCAGCCTCCTTTATAT 1259 >seq183188 Length=4836 Score = 141 bits (156), Expect = 3e-28 Identities = 415/628 (66%), Gaps = 30/628 (5%) Strand=Plus/Plus Query 53990 TATGGCGATTTCAAAGTTTTATAAAGATTATGCTTTAAAAACA---AACGATAAAAAATT 54046 ||||| |||| ||| |||||||| |||||||||||||| || | |||| ||| Sbjct 3364 TATGGGTATTTTAAAATTTTATAATTCTTATGCTTTAAAAAGTTTTAATGGTAAACAAT- 3422 Query 54047 CTACTTAGAATCTTATGAAGATCGTATTGCTATTGTTTCTTTATTCTTAGGACAAGGTAA 54106 | |||||| |||||||||| | ||| ||| | |||||| || | | ||||| Sbjct 3423 --ATTTAGAAAATTATGAAGATAGAGTTGTTATGAATAGTTTATTTTTCGCTGATGGTAA 3480 Query 54107 T-TTCAATAA---AGCAAAAAGTTTAGCTGTTTCTATGATTGAACAAAGATACCAACCAG 54162 | || || | || |||| || || | |||| || |||| ||||||| Sbjct 3481 TATTGAACATGCTAGTAAAATTTTAAGACAAAT-TATGTCTGGT---AGATTTCAACCAG 3536 Query 54163 CTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAATGGTTTCTTGTT-TC 54221 ||||||| || || ||||||| || | || | | || ||| ||| |||| || Sbjct 3537 CTACTCCCACATTTTTAAATGCAGGAAAAAAACAAAGAGGTGAATACACTTCATGTTATC 3596 Query 54222 TTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATACTGCAATGCAA 54281 || ||| ||| || |||| | || | ||||||| | | ||| | |||| || | || Sbjct 3597 TT-TTACGAATTGAAGATAACATGGAATCAATTGCTCGCGCTATTACTACTTCATTACAG 3655 Query 54282 TTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAGAAAAGAG 54341 ||||| ||| ||| || || ||||| || | | || | |||| | || Sbjct 3656 TTATCAAAACGTGGTGGTGGAGTTGCTTTGTGTTTAACAAATTTAAGAGAATTTGGAGCT 3715 Query 54342 CAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACTTTTAGAA 54401 | ||||||| |||| | || || | || || | |||||||||||| || | ||| Sbjct 3716 CCAATTAAAAATATTAAAAATCAAGCAACAGGCGTTATCCCAGTTATGAAAATTCTTGAA 3775 Query 54402 GATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTTTACTTA 54461 ||| || || ||||||||||| || || |||||| |||| ||||| || ||||| ||| Sbjct 3776 GATTCATTTTCATATGCTAATCAACTAGGTCAAAGACAAGGTGCTGGGGCAGTTTATTTA 3835 Query 54462 AA----CATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGCTGA 54517 || |||| |||| |||||||| ||| |||||| | || ||||| || Sbjct 3836 AATGTTCATCATCCA----GATATTATGTTATTTTTAGATTCAAAGCGTGAAAATGCAGA 3891 Query 54518 TGAAAAAGCCAGAATTCAATCTTTATCTATTGGATTA---ATTGCTGAAAAAATCTTCTT 54574 ||||||| | ||| |||| | ||| | ||| || ||| |||| | | || || Sbjct 3892 TGAAAAAATTCGTATTAAATCAATGTCTTTAGGAGTAGTTATTCCTGATATTA-CT--TT 3948 Query 54575 CCAATTAGCAAAAAGAAACGAAGAAATG 54602 |||||||||||| || ||| | ||| Sbjct 3949 TGAATTAGCAAAAAACAATGAACAGATG 3976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588171850660160