Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq183290 102 9e-17 seq183116 82.4 8e-11 >seq183290 Length=12096 Score = 102 bits (112), Expect = 9e-17 Identities = 213/314 (68%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 35940 GTGATGCGCGTTTATTTTGAAAAGCCTCGAACTACCGTAGGTTGGAAAGGTCTTGTAAAT 35999 || ||||| || || |||||||| || || ||||| || || |||||||| || | ||| Sbjct 5171 GTAATGCGGGTCTACTTTGAAAAACCCCGTACTACTGTTGGCTGGAAAGGACTAATTAAT 5230 Query 36000 GATCCATATCTTGACGGAAGTTTTGATATGAACCACGGTCTT-ATAGTTGCACGAACATT 36058 |||||| || | ||| | ||||| ||| | |||||| ||| |||| || ||| Sbjct 5231 GATCCAAATATGGACAACACCTTTGACATGGAAGCCGGTCTGCATA-TTGCGCGCCAATT 5289 Query 36059 GTGTCGTAAACTTCTACGTATAGGACTTCCATTAGCAACTGAAGTATTAGACCCATTCAC 36118 | | || ||| | || |||||||| |||| ||||| | | | || || | Sbjct 5290 GCTGCTGAATCTTGTTGAGATGGGACTTCCGCTAGCCACTGAGGCACTGGATCCTAATAG 5349 Query 36119 GATTAAGTATCTTTCTGGTATTTTCTCATGGGTTGCTATTGGCGCCCGTACGACTGAAAG 36178 | |||||||| | | ||||| ||| |||||||| || || || || ||| Sbjct 5350 CCCTCAGTATCTTGGCGATCTTTTCAGCTGGTCGGCTATTGGAGCACGCACTACAGAATC 5409 Query 36179 TCAGACACATCGTGAAATTGCTTCAGGTCTACCGATGTGCGTAGGCTTCAAGAACGCAAC 36238 || || ||||||||||| ||||| ||| | | ||| ||| ||||| || |||| || Sbjct 5410 ACAAACTCATCGTGAAATGGCTTCCGGTTTGTCCATGCCCGTTGGCTTTAAAAACGGTAC 5469 Query 36239 CAATGGT--TCTAT 36250 ||||| ||||| Sbjct 5470 TGATGGTAGTCTAT 5483 >seq183116 Length=3778 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 35940 GTGATGCGCGTTTATTTTGAAAAGCCTCGAACTACCGTAGGTTGGAAAGGTCTTGTAAAT 35999 || |||||||| ||||||||||| || || || ||| |||| ||||||||||| | || Sbjct 1674 GTCATGCGCGTCTATTTTGAAAAACCACGCACCACCATAGGATGGAAAGGTCTGATTAAC 1733 Query 36000 GATCCATATCTTGACGGAAGTTTTGATATGAACCACGG 36037 ||||| |||| ||||| |||||| | || || |||| Sbjct 1734 GATCCTCATCTGGACGGCAGTTTTCAGATTAATGACGG 1771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539905733965600