Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq148975 95.1 2e-14 seq116278 95.1 2e-14 seq114190 95.1 2e-14 seq88750 95.1 2e-14 seq72905 95.1 2e-14 seq50522 95.1 2e-14 >seq148975 Length=1539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 805 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 746 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 745 CCCGTCGGGGAG 734 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||| Sbjct 733 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 792 Query 139412 ATACTAACGAGGATTTT 139428 |||||| ||||||| || Sbjct 793 ATACTATCGAGGATCTT 809 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 805 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 746 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 745 CCCGTCGGGGAG 734 >seq116278 Length=4427 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 3306 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 3365 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 3366 CCCGTCGGGGAG 3377 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||| Sbjct 3378 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3319 Query 139412 ATACTAACGAGGATTTTGGTAC 139433 |||||| |||||| ||||||| Sbjct 3318 ATACTATCGAGGA--TTGGTAC 3299 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 3302 CCAATCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCA 3361 Query 11785 ATTCCCCGACGAGGAG 11800 |||||||| || |||| Sbjct 3362 ATTCCCCGTCGGGGAG 3377 >seq114190 Length=3048 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1800 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1859 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 1860 CCCGTCGGGGAG 1871 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||| Sbjct 1873 AACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 1814 Query 139411 TATACTAACGAGGA 139424 ||||||| |||||| Sbjct 1813 TATACTATCGAGGA 1800 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1800 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1859 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 1860 CCCGTCGGGGAG 1871 >seq88750 Length=3212 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1360 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1301 Query 8718 CCCGACGAGGAGCAG 8732 |||| || |||| || Sbjct 1300 CCCGTCGGGGAGTAG 1286 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 139349 ACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACC 139408 || ||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||| Sbjct 1285 ACTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 1344 Query 139409 ACTATACTAACGAGGATTTTG 139429 ||||||||| ||||||| ||| Sbjct 1345 ACTATACTATCGAGGATGTTG 1365 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1360 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1301 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 1300 CCCGTCGGGGAG 1289 >seq72905 Length=4213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 4111 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 4052 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 4051 CCCGTCGGGGAG 4040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| || |||||| | |||||||||||||||| | |||| |||||||| |||||||| Sbjct 4039 ACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4098 Query 139412 ATACTAACGAGGATTTTG 139429 |||||| ||||||| ||| Sbjct 4099 ATACTATCGAGGATGTTG 4116 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 4111 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 4052 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 4051 CCCGTCGGGGAG 4040 >seq50522 Length=9031 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 2100 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 2041 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 2040 CCCGTCGGGGAG 2029 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| || |||||| | |||||||||||||||| | |||| |||||||| ||||||| Sbjct 2027 AACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 2086 Query 139411 TATACTAACGAGGA 139424 ||||||| |||||| Sbjct 2087 TATACTATCGAGGA 2100 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 2100 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 2041 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 2040 CCCGTCGGGGAG 2029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 651349010154800