Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq114852 152 5e-32 >seq114852 Length=3422 Score = 152 bits (168), Expect = 5e-32 Identities = 596/929 (64%), Gaps = 21/929 (2%) Strand=Plus/Plus Query 148257 TGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAAC 148316 ||||| || || ||||| || || | || ||||| || ||| | || ||| | Sbjct 1171 TGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAA 1230 Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 |||||||| || || |||||||||| ||| || || || | ||| || |||||| || Sbjct 1231 GGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCC 1290 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436 | || | |||||||| | || | | |||||||| |||| | | ||||||| Sbjct 1291 AAAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCC 1350 Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGG 148496 || || | ||| | |||||||| || || || || || || |||| | || Sbjct 1351 CATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGT 1410 Query 148497 CTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGC 148556 ||| ||||| | || | || | | |||| ||| || || || || | Sbjct 1411 GAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAAT 1470 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCG 148616 ||||| ||||| || || ||| |||||| || | || || ||| |||||| ||| Sbjct 1471 GCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGCTCTCG 1530 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 || || ||||| | | || || || |||| || |||||||| | || ||||| Sbjct 1531 TATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGG 1590 Query 148677 CGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC---GGATAGTGGTTGCGGTCGATG 148733 || ||| | | ||| || | | ||| || ||||| || || ||||| Sbjct 1591 CGATGTCTGAAGTTTGATTTCTTTG---TTTCGGGCAATGGATAATGATTCACTTCGATA 1647 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAA-TTCTGCGCAGCAATTCAAAATCGTA 148792 || || | ||||| ||| || ||| |||| |||| ||| || ||| ||||| Sbjct 1648 ATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAA-TCGTA 1706 Query 148793 ---CTTGTCA--TCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCC 148847 ||| || | || | ||| || | || || || |||| ||| || || || Sbjct 1707 TGACTTTTCGGGTGTAACAAACATA--TTTAGCGCAATCGATGCTAAATTACAAACAGCT 1764 Query 148848 GTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACG 148907 |||||||| || ||||| || || || | ||| | ||| || ||||| || | Sbjct 1765 ACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATTTAATGGTG 1824 Query 148908 CCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCG 148967 || || || | |||||| ||||| | || || || ||||||||||||||||| ||| | Sbjct 1825 CCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTATGGTGTG 1884 Query 148968 CCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGC 149024 || || || || |||| ||| | || |||| | || || || |||| | Sbjct 1885 CCGGTCTCTACTTGCGATTCAATAATAGCAAACCAA---AGACTTTGTGCTTTCACTGTC 1941 Query 149025 TGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAG 149084 | | ||| ||||| ||||| ||| |||||| | | |||||| | || || | Sbjct 1942 TTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAACTCATCACCCCAT 2001 Query 149085 CAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTAC 149144 || | ||||| || |||||||| |||||||| |||||||| | | | || | Sbjct 2002 ACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTTCATTAGCTTCA 2061 Query 149145 ACGCGCTTCATAAACAGATCGGGCACCCA 149173 || || |||||||| ||||| || | ||| Sbjct 2062 ACACGTTTCATAAAAAGATCTGGTATCCA 2090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482313192305800