Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq114852 203 8e-47 seq112850 118 3e-21 seq63822 98.7 2e-15 seq181320 96.9 8e-15 >seq114852 Length=3422 Score = 203 bits (224), Expect = 8e-47 Identities = 587/891 (66%), Gaps = 37/891 (4%) Strand=Plus/Minus Query 110285 TCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCG 110344 |||||||| || | | | ||||||||||| ||||| || |||||| |||| ||||| | Sbjct 2673 TCGTGACTTTGGTTATAATTATTTTGGTTTTAAAACGCTGGAACGTTCTTACTTACTCAG 2614 Query 110345 TGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTAT 110404 | |||||| | || |||| ||||| || || ||||| | |||||||| |||||||| Sbjct 2613 ATTAAATGGCAAAATTGTTGAGCGTCCACAGCATATGTTAATGCGTGTTGCCATTGGTAT 2554 Query 110405 TCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGC 110464 ||||| | ||||| | || | || ||| || || || | |||| | Sbjct 2553 ACATGGCGAGGATATAGATGCAGCCATCGAAACATACAATTTACTTTC-----AGAACGT 2499 Query 110465 TATT-----CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGG-ACAATTGGC 110518 |||| |||||| | || || || || || | ||| || | || |||| | | Sbjct 2498 TATTTTACGCATGCTTCACCAACACTGTTCGCTGCCGCAAC-AAGGCAGCCACAACTATC 2440 Query 110519 TTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGG--TATTTA-TGATGCTCT 110575 ||||||||||| | ||| || ||||| ||||| || |||| | | || | Sbjct 2439 ATCTTGCTTTCTCTTGACAATGGTCGCCGATTCGATTGATGGCATATTCACTTCAGCACA 2380 Query 110576 TAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATAT 110635 | || ||| | ||||| ||| |||| || ||||| | | || ||| ||| Sbjct 2379 TCAATG---TGCATTAATTTCCAAATCAGCTGGTGGTATTGGACTCAATGTACATTGTAT 2323 Query 110636 TCGCTCAAAAGGA---GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCC 110692 ||| | | ||| |||| | || ||| || || | || | ||| | || || Sbjct 2322 ACGCGCTAGAGGCACGGCAATTGCCGGTACA---AATGGCACATCGAATGGTTTGGTACC 2266 Query 110693 AATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGG---TGGTAAGAGAAA 110749 |||||| ||||| ||||| | ||| ||||| |||| || |||||| | Sbjct 2265 AATGTTGAGAGTATTCAATAATGTGGCACGTTATGTAGATCAGGGCGGTGGTAAACGTCC 2206 Query 110750 TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACT 110809 |||| | ||||| |||||| | ||||| |||||| ||||| ||||||| || || || | Sbjct 2205 TGGCGCGTTTGCAATCTATTTAGAACCATGGCATGCAGATGTATTTGAGTTTTTGGATTT 2146 Query 110810 TCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGAT 110869 ||||| || |||||||| | || | |||||||||||||| | ||||| Sbjct 2145 AAAGAAAAACACTGGCAAGGAAGAACATCGTGCTAGAGATTTATTTTATGCTTTATGGAT 2086 Query 110870 TTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCA 110929 ||||| | || |||||||||||| ||| |||| ||||| || ||||| ||||| Sbjct 2085 ACCAGATCTTTTTATGAAACGTGTTGAAGCTAATGAAGATTGGTCGCTGATGTGCCCTCA 2026 Query 110930 TCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATA 110989 | ||||||||| ||| |||| || | ||||| ||| | | || ||||| Sbjct 2025 CAAGTGTCCTGGTCTGCATGAGGTATGGGGTGATGAGTTCGAACAATTATATACTAAATA 1966 Query 110990 TGAAAAAGAAGGCAAGTTTCGCAAACA----AATTCCAGCTCAAGAACTTTGGTTCAAAA 111045 ||| ||| ||| | | ||| || | | | ||| ||| |||||||| | Sbjct 1965 TGAGCAAG-AGGGACG---CGCTAATAAGACAGTGAAAGCACAAAGTCTTTGGTTTGCTA 1910 Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAAT 111104 | ||||||| ||||| || || || || || || || |||| || ||| ||| |||| Sbjct 1909 TTATTGAATCGCAAGTAGAGACCGGCACACCATACATGCTGTACAAGGATGCAT-GTAAT 1851 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || || ||||||| ||| | || || ||||| | ||||||||| ||| Sbjct 1850 CGGAAGAGTAATCAACAAAATGTTGGCACCATTAAATGTAGTAATTTATGC 1800 >seq112850 Length=8323 Score = 118 bits (130), Expect = 3e-21 Identities = 139/185 (75%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| ||| |||||| |||| | |||||| | |||||| |||| ||||| ||| Sbjct 3321 AGACATTTACGTGATGATGATTTGGTTATTTTCAATCGTCAACCAACACTACATAAGATG 3380 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| ||||| ||||| || | | ||||| || | ||| | || Sbjct 3381 AGTATGATGGGGCATCGTGTCAAGGTATTGCCTTGGTCAACATTCCGTATGAATTT--GT 3438 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 | ||||| |||||||| || ||||||||||| |||||||||||| ||||||| || Sbjct 3439 -CATGTACTTCACCTTATAACGCCGATTTTGATGGCGATGAAATGAATTTGCATGTGCCG 3497 Query 305483 CAATC 305487 ||||| Sbjct 3498 CAATC 3502 >seq63822 Length=2586 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || ||||||| || | || ||| | |||||| || ||||||||||||| ||||||| Sbjct 1430 GATAATGATTTAGTAATTTTTAATCGTCAACCAACATTGCATAAAATGTCAATGATGGGA 1371 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG--- 305434 ||| ||||| || || | | | ||||| || | ||| || | ||||| Sbjct 1370 CATCGTGTCAAGGTGTTGCCGTGGTCTACATTCCGTATGAATTTAT---CATGTACCACC 1314 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 || |||||||| ||||||||||| |||||||||||| | |||||||| ||| Sbjct 1313 CCCTATAATGCTGATTTTGATGGTGATGAAATGAATTTACATGTACCACAA 1263 >seq181320 Length=1136 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| || ||||||||||||||||| ||| |||| ||| ||| Sbjct 3 GTACTATTCAATCGTCAACCTTCGCTGCATAAAATGTCTATTATGTGTCATCAAGCTAAA 62 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | | ||||| || || || | | || || || || |||||||| ||| Sbjct 63 GTGCAACCGCAACGTACATTCCGTTTTAACGAGTGCGCATGCACACCCTATAATGCTGAT 122 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| || ||||||||| | ||| |||| ||| Sbjct 123 TTTGATGGTGACGAAATGAATTTACATTTACCACAA 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184025609081495