Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq183290 105 7e-18 seq183116 82.4 8e-11 >seq183290 Length=12096 Score = 105 bits (116), Expect = 7e-18 Identities = 214/314 (68%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 133284 ATAGA--ACCATTGGTTGCGTTCTTGAAGCCTACGCACATCGGTAGACCTGAAGCAATTT 133341 ||||| ||||| || |||| || ||||| ||| ||| | | ||| ||||| |||| Sbjct 5483 ATAGACTACCATCAGTACCGTTTTTAAAGCCAACGGGCATGGACAAACCGGAAGCCATTT 5424 Query 133342 CACGATGTGTCTGACTTTCAGTCGTACGGGCGCCAATAGCAACCCATGAGAAAATACCAG 133401 ||||||| || || ||| || || || || |||||||| ||| ||||| | | Sbjct 5423 CACGATGAGTTTGTGATTCTGTAGTGCGTGCTCCAATAGCCGACCAGCTGAAAAGATCGC 5364 Query 133402 AAAGATACTTAATCGTGAATGGGTCTAATACTTCAGTTGCTAATGGAAGTCCCATACGTA 133461 |||||||| | | || || | | | ||||| |||| ||||||||||| | Sbjct 5363 CAAGATACTGAGGGCTATTAGGATCCAGTGCCTCAGTGGCTAGCGGAAGTCCCATCTCAA 5304 Query 133462 GAAGTTTACGACACAATGTTCGTGCAACTAT-AAGACCGTGGTTCATATCAAAACTTCCG 133520 ||| || | |||| || |||| ||| |||||| | ||| ||||| | | Sbjct 5303 CAAGATTCAGCAGCAATTGGCGCGCAA-TATGCAGACCGGCTTCCATGTCAAAGGTGTTG 5245 Query 133521 TCAAGATATGGATCATTTACAAGACCTTTCCAACCTACGGTAGTTCGAGGCTTTTCAAAA 133580 || | || ||||||||| | || |||||||| || || ||||| || || |||||||| Sbjct 5244 TCCATATTTGGATCATTAATTAGTCCTTTCCAGCCAACAGTAGTACGGGGTTTTTCAAAG 5185 Query 133581 TAAACGCGCATCAC 133594 || || ||||| || Sbjct 5184 TAGACCCGCATTAC 5171 >seq183116 Length=3778 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 133497 CCGTGGTTCATATCAAAACTTCCGTCAAGATATGGATCATTTACAAGACCTTTCCAACCT 133556 |||| || || | |||||| ||||| |||| ||||| || | ||||||||||| ||| Sbjct 1771 CCGTCATTAATCTGAAAACTGCCGTCCAGATGAGGATCGTTAATCAGACCTTTCCATCCT 1712 Query 133557 ACGGTAGTTCGAGGCTTTTCAAAATAAACGCGCATCAC 133594 | ||| || || || ||||||||||| |||||||| || Sbjct 1711 ATGGTGGTGCGTGGTTTTTCAAAATAGACGCGCATGAC 1674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534063151159600