Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq182965 113 1e-19 >seq182965 Length=2476 Score = 113 bits (124), Expect = 1e-19 Identities = 279/417 (67%), Gaps = 20/417 (5%) Strand=Plus/Minus Query 298902 ACCAAAAAGAATGCTATTCTCACTGGTGAAGCTGGTGTAGGTAAAACACAAATCATCGAC 298961 |||||||| ||| || |||| | ||||||| ||||||| ||||||||| || | || Sbjct 1385 ACCAAAAATAATCCTGTTCTGATTGGTGAACCTGGTGTGGGTAAAACAGCTATTGTGGAA 1326 Query 298962 GGGCTTGCACAAGCTATTGCTGATGGTAACGTACCTGAACACCTGAAAG-ACGTTGAAAT 299020 || || || ||| |||| | ||| | ||||| ||| || |||| |||| | | Sbjct 1325 GGACTAGCGCAACGTATTATCAACGGTGAAGTACCAGAAGGTCTAAAAGGACGTCGTG-T 1267 Query 299021 TCTTTCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGA 299080 || || || || | ||| || || |||||| | || ||||| |||||||||||||| Sbjct 1266 GCTATCGCTGGATATGGGTTCACTGGTTGCTGGAGCAAAATATCGCGGTGAATTTGAAGA 1207 Query 299081 ACGCATCGACAATTTGCTAAAAGAA----CTAA--AGAAACGTGAAAATACTATTGTTTT 299134 ||| | | | | | || ||| |||| || || || || |||| | || Sbjct 1206 ACGTCTGAAGGGTGTATTGAATGAACTGTCTAAGGAGGAAGGT---AACGTTATTTTGTT 1150 Query 299135 CATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACAT 299194 ||||||||| | || | ||||||||| || || ||| |||| | ||||| Sbjct 1149 TATTGATGAATTACACACTATGGTTGGCGCAGGAAAAGCA---GATGGGGCGATGGATGC 1093 Query 299195 GAGCAATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTC---GTGTAATTGGTGCAAC 299251 ||||||||| ||||| || || |||||||||| | | | ||| || || || Sbjct 1092 CGTCAATATGCTGAAGCCGGCTCTGGCACGTGGTGAATTGCACTGCGTA---GGCGCGAC 1036 Query 299252 AACATATGATGAATATCGTAAAAATATCGAGAAAGATAGTGCATTAACTCGTCGTTT 299308 || ||||||||||||| | | || || |||||| |||| | |||||||| Sbjct 1035 TACGCTTGATGAATATCGTCAGTACATTGAAAAAGATGCTGCACTTGAGCGTCGTTT 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1112552257028355