Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_025462.1 Length=99730 Score E Sequences producing significant alignments: (Bits) Value seq183117 96.9 2e-15 >seq183117 Length=3786 Score = 96.9 bits (106), Expect = 2e-15 Identities = 173/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 19885 AATTGTTACTGGGTTTGATCAGATTGAGTGGGTTATTAATGAGATTAAAACA-AACCCAA 19943 |||| ||| ||| ||||||| |||| | |||| || | |||||| | || || Sbjct 3168 AATT-TTAATGGTGTTGATCA-ATTGCAGGAGTTAATAGAAAATTTAAAAAACAATCCTT 3111 Query 19944 CATCACGAAGATTAATTGTATCAGGTTGGAATCCTCATGATGTTGCAGATGTAGATTTAC 20003 ||||||||| ||| |||||| || |||||| || || | || | | ||| Sbjct 3110 TTTCACGAAGACACATTTTATCAGCATGAAATCCTGCAGAAATTAAAAATATGGCACTAC 3051 Query 20004 CACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTAAA---TTATCTTGCCAGT 20060 |||| || ||||| || ||||||| | || |||| |||| |||||||| || | Sbjct 3050 CACCATGTCATACTTTAATTCAATTTTACGTTTCTGATGATAAAAAATTATCTTGTCAAT 2991 Query 20061 TGTATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTT 20120 | |||||||| ||||| || | || | || ||||| ||||||||||| |||||||| | Sbjct 2990 TATATCAACGTAGTGCAGATATTTTTTTAGGAGTTCCTTTTAATATTGCTTCTTATGCAT 2931 Query 20121 TACTTACA 20128 || | ||| Sbjct 2930 TATTAACA 2923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318298558388045