Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq96614 100 9e-18 seq75334 98.7 3e-17 >seq96614 Length=1656 Score = 100 bits (110), Expect = 9e-18 Identities = 78/91 (86%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 2750 TCTTTGTACTGTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCT 2809 ||||| || |||||| || ||| |||||||||||||||||| ||||||||||||||| Sbjct 834 TCTTT-TAAAGTGTTTN--GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCT 778 Query 2810 AAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||||||||| ||||||| |||||| ||| || Sbjct 777 AAAGGTCCCCGGTTCAATCCCGGGTTTCGGC 747 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 223 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 164 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 163 CCGGGTTTCGGC 152 >seq75334 Length=1388 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 1071 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1012 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1011 CCGGGTTTCGGC 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15817824895275