Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq66438 87.8 3e-11 >seq66438 Length=2923 Score = 87.8 bits (96), Expect = 3e-11 Identities = 188/275 (68%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 ||||||| || ||||||||||||| || ||||| || ||| | |||| || | | | Sbjct 1596 AGGCCGAAGCATCCTTTTGGACCGTAGAAGAGGTTGATCTCTCCAAAGACATGGACGATT 1537 Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTC--ATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| || | |||| | || || |||||| |||| ||||| | | |||| |||| Sbjct 1536 GGGTACGTCTTACCGACAATGAACGTCATTTCGTATCA--CACGTTTTAG-CTTTCTTCG 1480 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| |||||| || || || || || | | || || | |||| || ||| Sbjct 1479 CCGCCTCCGATGGTATTGTTAATGAAAATCTAGTTGAACGTTTCAGTCAAGAAGTACAAA 1420 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | || ||||||| ||||| || || || || || || ||||| | || || |||| Sbjct 1419 TTACCGAAGCACGTTGCTTTTATGGCTTTCAAATAGCAATGGAAAATGTGCATTCAGAAA 1360 Query 1456034 CCTACTCGC-TCCTGATCGACACCTACGTCAAGGA 1456067 || | || | || || || |||||| | ||||| Sbjct 1359 TGTA-TAGCATTCTTATTGATACCTACATTAAGGA 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7160132060353790