Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq157162 125 7e-24 seq114852 116 4e-21 >seq157162 Length=2207 Score = 125 bits (138), Expect = 7e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | || || || ||||||||||| || ||||||||| | || | Sbjct 606 AGACGCAATACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAGTCGGATAGAGTACGT 547 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | |||||||| || ||||| | ||| || ||||| || || || |||||| Sbjct 546 CCATCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCTGGTGGGATACCTTCT 487 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| |||||| || | ||||| || | || || || | ||| Sbjct 486 TTATCCTGAATTTTAGCTTTGACATTTTCAATGGTGTCCGATGGCTCGACCTCCAAAGTG 427 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 ||||| || || |||| ||||||||||||||||||||| |||| Sbjct 426 ATGGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCATTGTGTT 383 >seq114852 Length=3422 Score = 116 bits (128), Expect = 4e-21 Identities = 444/693 (64%), Gaps = 17/693 (2%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 || ||||| |||| ||| || ||||| | || |||||||||||||| || || || Sbjct 1913 GCTATTATTGAATCGCAAGTAGAGACCGGCACACCATACATGCTGTACAAGGATGCATGT 1854 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || || || |||||| || || ||||||||| || || ||| | ||| | ||| Sbjct 1853 AATCGGAAGAGTAATCAACAAAATGTTGGCACCATTAAATGTAGTAATTTATGCACAGAA 1794 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTA 8412 ||||| |||| || || || ||||| || ||||| ||| |||| ||| | || Sbjct 1793 ATTGTTGAGTATTCAGCACCGGATGAAGTAGCTGTTTGTAATTTAGCATCGATTGCGCTA 1734 Query 8413 AACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACG---CC 8469 || || ||| | || | ||| | ||||| || ||| || ||| | | || Sbjct 1733 AATATGT---TTGTTACACCCGAAAAGTCATACGATTTCAAACGCTTAAAAGAAGTTACC 1677 Query 8470 GTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAA 8529 | || ||| || ||| || || || || || || ||| |||||| ||| Sbjct 1676 AAGACCGTAACG---CGTAATCTAAATAAAATTATCGAAGTGAATCATTATCCATTGCCC 1620 Query 8530 GAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCC 8589 ||| | ||| ||| | | || | ||| | || | ||||| |||||| | || Sbjct 1619 GAAACAAAGAAATCAAACTTCAGACATCGCCCCATCGGTATTGGCGTACAAGGTTTTGCA 1560 Query 8590 GACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGC---CAAGAAGCGCGCATG-CTCAA 8645 || || || | | |||| ||| ||||| ||| || | || | | || |||| Sbjct 1559 GATGCTTTAATCCTTATGCGTTACCCATACGAGAGCGAGCAGGCTGCACTCTTGAATCAA 1500 Query 8646 CATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCG 8705 | |||| ||||| |||| || |||||||| ||||| || ||| || | || Sbjct 1499 C----AAATTTTCGAAACAATGTACTATGGCGCATTGGAAGCTAGTTGTGAATTGGCTGA 1444 Query 8706 AGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATA 8765 | ||| || || || ||| | |||| ||| |||| ||| || ||| | ||||| Sbjct 1443 AAAATATGGTACTTATGAAACATACGAAGGCTCACCTGTTAGCAAAGGTATACTCCAATA 1384 Query 8766 CGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAAT 8825 || ||||||||| | || ||| | | ||| | |||| | |||||| ||||| Sbjct 1383 TGATATGTGGAATAAAAAACCAACCGATCTATGGGACTGGACTGTATTGAAAGAGAAAAT 1324 Query 8826 TGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGC 8885 || || | ||||| || | | |||| |||||| || || | ||||| Sbjct 1323 AAAGCAGCATGGCGTACGCAACTCCTTACTTTTGGCACCCATGCCTACTGCATCAACTGC 1264 Query 8886 TCAAATAATGGGAAACAACGAATCCTTTGAGCC 8918 |||||| ||||| ||||| ||||| ||||| || Sbjct 1263 TCAAATTATGGGCAACAATGAATCTTTTGAACC 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504240437503400