Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq114852 661 0.0 seq66438 219 6e-52 >seq114852 Length=3422 Score = 661 bits (732), Expect = 0.0 Identities = 1271/1854 (69%), Gaps = 34/1854 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||||| ||||||| ||| ||||| || ||||| || || |||| || | || Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || ||| ||| |||||| ||| |||| || |||| ||||||||| | |||||| ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || || || | ||| || ||||| || || || ||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGAT 68631 || | |||||| ||| | || | | || | | || || ||| || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 |||| | || ||||||| || | || || ||||||| |||||| || || | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 | | | | ||| ||||||| | ||||||||| || |||| || | |||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 ||||| ||||| ||||| | ||||||||| || |||| ||||||||||||||||||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG-TGTTATGATTTTATCTTT 68870 || ||||| ||||||| | ||| || | | ||||| || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTT 1334 Query 68871 TAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 | |||| ||||| ||||| | |||| |||||| | ||| ||||| || || Sbjct 1335 CAATACAGTCCAGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTAT 1394 Query 68931 TCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTC 68990 || || || || ||| || | ||||||||||||| || | | |||||| | ||| Sbjct 1395 ACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTC 1454 Query 68991 ACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGA-GATCTT 69049 |||||| || || ||||| || || || |||||||||||||| | | ||| | || Sbjct 1455 ACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGA---- 1510 Query 69050 GTGC----TTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105 |||| | || | || ||| |||| ||| | | ||| || || |||||||| || || Sbjct 1511 GTGCAGCCTGCTCG-CTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCT 1569 Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165 || || ||||||||||| || | |||||| ||||| | | | ||| || | ||| Sbjct 1570 TGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATGGA 1629 Query 69166 TAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTT 69225 |||| ||| | || ||||||||||| ||||| || ||| || || || ||| Sbjct 1630 TAATGATTCACTTCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTT 1689 Query 69226 A---GTTTGAGAAAATCAAATCGTCCATC---TATAACAAACATATTCAGTGCTACAGAT 69279 | |||||| |||| || || | ||||||||||||| || || | ||| Sbjct 1690 AAGCGTTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCGAT 1746 Query 69280 GCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGA 69339 |||| ||||||||| ||||| |||| | || ||| | | || ||||| |||| | Sbjct 1747 GCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAA 1806 Query 69340 TTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTG 69399 ||||||||||| || || || | |||||| ||||||||||| ||||| || |||||| Sbjct 1807 TTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTG 1866 Query 69400 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACC 69459 || || || | || || || || || | || ||||| ||||||| ||||| ||| Sbjct 1867 TACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA-GACT 1925 Query 69460 CTAGCATTTATTACGGTCTTGTAA-CGCTTCTCTTTT--TCATATTGTGTATATAGCCGT 69516 | ||| || ||||| | | ||| || || || ||||||| ||||||| || Sbjct 1926 TTGTGCTTTC--ACTGTCTTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGT 1983 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| ||||| ||||| || |||| || |||||||| | | || ||||||| ||| Sbjct 1984 TCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGAC 2043 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || | |||| | | | ||| ||||||||||| ||||| || ||||| | ||| ||| Sbjct 2044 CAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAAT 2103 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | |||||| | | || |||||| || || || ||||| || | ||| | |||||| | Sbjct 2104 AAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACTCAAAT 2163 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | ||| | |||||||||||||| ||| || || | | || || |||||| || ||| Sbjct 2164 ACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCCC 2223 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||||| || | || ||||| | ||||||| ||| || | | |||||| ||| Sbjct 2224 TGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCGAT 2283 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 | |||||||| || | ||| | ||||| ||||| ||| | | | || || Sbjct 2284 GTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTGAGTCCA 2343 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATG-TGTCATATATACCCTC 69935 || || || || ||| || |||| ||||| | | || || | |||| || || Sbjct 2344 ATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGA-ATATGCCATC 2402 Query 69936 TATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTC 69994 || ||| | | || ||| ||| ||||| || || | ||| | || | ||| Sbjct 2403 AATCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGCCTTGTTG 2461 Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG 70054 | ||| || | ||| || || || || || || | ||| ||||| | |||||||| Sbjct 2462 CGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGTATG 2521 Query 70055 TTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 |||| || |||| ||||||||| ||| || || || || |||||||| ||||||| Sbjct 2522 TTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTAACATAT 2581 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||| || || || || |||| ||||| | | | | ||| || |||||| |||| Sbjct 2582 GCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCCAGCGTTT 2641 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 |||| |||||||| || || |||||| | || || |||||| | ||||||| Sbjct 2642 TAAAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATTTA 2695 >seq66438 Length=2923 Score = 219 bits (242), Expect = 6e-52 Identities = 480/711 (68%), Gaps = 24/711 (3%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| | ||| || |||||||| || || ||| | | ||||||||| || || | Sbjct 903 CAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAA 962 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || ||||| | ||| || |||| || |||| ||| || | || ||||| | || || Sbjct 963 ATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGAT 1022 Query 39565 --CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 | || ||| ||| |||||| || | ||||||| ||||| | || || Sbjct 1023 TTCAATAATACG--CTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || |||||||||| || ||||| | |||| || || || ||||| | || ||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 ||||||||||| ||||| | |||||| || | ||||||| || |||||| |||||| Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCAC 39799 || || || |||||||||| | | || || || | | | || ||| ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCA- 1259 Query 39800 TTCT-GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | || ||||||||||||| || ||| || ||| || ||||| |||||||||| Sbjct 1260 TGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAA---- 1315 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 ||| | | | ||| |||| || ||||| || | | |||||||||||||| Sbjct 1316 ATANTTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGA 1366 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 ||| | ||||| || || || ||||| || ||||| || | |||||| ||||||||||| Sbjct 1367 ATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTAC 1426 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 ||| || || | ||| | | ||||||||| || || ||||| ||||| || || Sbjct 1427 TTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAA 1486 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA-ATTTATTCCAGTCATTGA 40097 || || || ||| | |||| ||||| | || | | || ||| || | | Sbjct 1487 AGCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTA-CCCAATCGTCCA 1545 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 | ||||| || | ||| || ||||| | |||||||| || || || |||| Sbjct 1546 TGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685334963143800