Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq183188 96.9 3e-15 >seq183188 Length=4836 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/201 (72%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 107127 GGTGTTGTTCCTGTTATGAAAATGCTAGAAGA--CGGTTTCCGGTACGCAAATCAGTTAG 107184 || ||| | || ||||||||||| || ||||| | |||| || || ||||| ||| Sbjct 3746 GGCGTTATCCCAGTTATGAAAATTCTTGAAGATTCATTTTC--ATATGCTAATCAACTAG 3803 Query 107185 GGCAAAGACAAGGTGCAGGCGCAGTCTATCTAAATGTTTTCCATGCGGATATTATGGACT 107244 | |||||||||||||| || ||||| ||| |||||||| ||| | ||||||||| | Sbjct 3804 GTCAAAGACAAGGTGCTGGGGCAGTTTATTTAAATGTTCATCATCCAGATATTATGTTAT 3863 Query 107245 TTTTA---TCAACTAGAAAAGAAAATGCAGAATCCGCAAAGCAAATCAAAACACTTTCTT 107301 ||||| |||| || ||||||||||| || | || ||| || | |||| Sbjct 3864 TTTTAGATTCAA--AG-CGTGAAAATGCAGATGAAAAAATTCGTATTAAATCAATGTCTT 3920 Query 107302 TGGGAGTAGTTGTTCCCGATA 107322 | ||||||||| |||| |||| Sbjct 3921 TAGGAGTAGTTATTCCTGATA 3941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 464462984399600