Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq182965 113 1e-19 seq183044 84.2 5e-11 >seq182965 Length=2476 Score = 113 bits (124), Expect = 1e-19 Identities = 279/417 (67%), Gaps = 20/417 (5%) Strand=Plus/Plus Query 332025 AAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTT 332084 |||||||| | |||| |||||| || || | | ||||||||||||| || || Sbjct 979 AAACGACGCTCAAGTGCAGCATCTTTTTCAATGTACTGACGATATTCATCAAGCGTAGTC 1038 Query 332085 GCACCAATTACAC---GAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATG 332141 || || ||| | | | |||||||||| || || ||||| ||||||||| Sbjct 1039 GCGCC---TACGCAGTGCAATTCACCACGTGCCAGAGCCGGCTTCAGCATATTGACGGCA 1095 Query 332142 TCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAA 332201 ||||| | |||| ||| || || ||||||||| | || | ||||||||| || Sbjct 1096 TCCATCGCCCCATC---TGCTTTTCCTGCGCCAACCATAGTGTGTAATTCATCAATAAAC 1152 Query 332202 ACAATAGTATTTTCACGTTTCT--TTAG----TTCTTTTAGCAAATTGTCGATGCGTTCT 332255 | |||| || || || || |||| ||| || | | | | | |||||| Sbjct 1153 AAAATAACGTT---ACCTTCCTCCTTAGACAGTTCATTCAATACACCCTTCAGACGTTCT 1209 Query 332256 TCAAATTCACCACGATACTTAGTACCAGCAGTCAATGCACCAACATTTAGTGAAAGAATT 332315 ||||||||||| ||||| || | |||||| || || ||| | || || || || | Sbjct 1210 TCAAATTCACCGCGATATTTTGCTCCAGCAACCAGTGAACCCATATCCAGCGATAGCA-C 1268 Query 332316 TCAACGT-CTTTCAGGTGTTCAGGTACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTC 332374 | |||| |||| || ||| ||||| | ||| | |||| ||| || || || || Sbjct 1269 ACGACGTCCTTTTAGACCTTCTGGTACTTCACCGTTGATAATACGTTGCGCTAGTCCTTC 1328 Query 332375 GATGATTTGTGTTTTACCTACACCAGCTTCACCAGTGAGAATAGCATTCTTTTTGGT 332431 | || ||||||||| ||||||| ||||||| | |||| || ||| |||||||| Sbjct 1329 CACAATAGCTGTTTTACCCACACCAGGTTCACCAATCAGAACAGGATTATTTTTGGT 1385 >seq183044 Length=3031 Score = 84.2 bits (92), Expect = 5e-11 Identities = 198/290 (68%), Gaps = 17/290 (6%) Strand=Plus/Plus Query 258271 ATGTTACGAATAATGTGAGTGTATGATTTGCTATGAATCGCACCTTCAAAGAATGCCCAT 258330 || ||||| ||||| || || || ||| | ||| || | |||| |||||||||| Sbjct 1777 ATATTACGTATAATATGCGTATAAGATCGGGAATGGATGGT---TTCAGAGAATGCCCAG 1833 Query 258331 GTCTCTATA-AAGTTCTCTAGTTCAGG--TAGAGATGCATATGGAAGTAACATTAGGTTT 258387 || || | ||||| || |||||||| ||||||| || |||| || || || |||| Sbjct 1834 GTTTCCACCCAAGTT-TCCAGTTCAGGAATAGAGAT-CA-ATGGTAGCAATGCTACGTTT 1890 Query 258388 GGACCACGACCTTGTACGGAATCAAGAAGAATTTGACGTTTCAAGTTAGAGGTAAAAATG 258447 |||| ||| ||||| | ||||| | ||| ||||| |||||| ||| | | |||||| Sbjct 1891 GGACTACGTCCTTGGATAGAATCCAACAGAGTTTGATATTTCAAATTACTGATGAAAATG 1950 Query 258448 TGCTTCTCGGAATCATTA----AGGTTGGCAAAATCAATTTTATCTTTAGATACGTCAAC 258503 || || || || ||| ||| | | | |||| || ||| ||||| ||||| Sbjct 1951 TGTTTTTC---ATGTTTAGCCAAGGCTTG-ATAATCGATGCGATCACGTGATACATCAAC 2006 Query 258504 TTCACCAGGAGTCCAGAAGAAACTTTTCTGTTGCTCTGTTAGTTTTTCAA 258553 ||| | || |||||| ||| |||| || |||||||||||| Sbjct 2007 TTCTTCTGGGCGCCAGAAAAAAGAAAGTTGTTTTTCAATTAGTTTTTCAA 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111214605853160