Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq182965 118 2e-21 seq183268 93.3 9e-14 seq183156 84.2 5e-11 >seq182965 Length=2476 Score = 118 bits (130), Expect = 2e-21 Identities = 341/517 (66%), Gaps = 16/517 (3%) Strand=Plus/Minus Query 48214 CTCTAGAAGATTTTACTGTAAACCTGACTAAACTTGCACAGGAAGGTAAACTTGACCCAA 48273 || || || | | |||| | | ||||| ||| ||| || || || ||||| ||| Sbjct 1498 CTTTAAAAAAATATACTATCGATCTGACCGAACGTGCGGAGATTGGCAAGCTTGATCCAG 1439 Query 48274 TGATCGGTCGCCAAAAAGAACTTCAATCACTA--ATTGAAGTAATGGCACGTAAAAACAA 48331 | || ||||| | ||||| ||| || || ||| | ||| || ||| | ||| Sbjct 1438 TAATAGGTCGGGATGAAGAAATTCG-TCG-TACCATTCAGGTACTGCAGCGTCGTACCAA 1381 Query 48332 AAAGAATGCTATTCTTACTGGTGATGCAGGAGTCGGTAAAACTCAGATCGTCGATGGTTT 48391 ||| ||| || |||| | |||||| | || || |||||||| || || || || | Sbjct 1380 AAATAATCCTGTTCTGATTGGTGAACCTGGTGTGGGTAAAACAGCTATTGTGGAAGGACT 1321 Query 48392 TGCACAAGCCATTGCTGATGGTGACGTACCTGACTATCTGAAAGGTGTTGAGGTATTATC 48451 || ||| ||| | ||||| ||||| || ||| ||||| | || |||| Sbjct 1320 AGCGCAACGTATTATCAACGGTGAAGTACCAGAAGGTCTAAAAGGACGTCGTGTGCTATC 1261 Query 48452 TCT---TAACGTTTCTGCTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACG 48508 || || | ||| || |||||| ||||||| || |||||||| |||||||| Sbjct 1260 GCTGGATATGGGTTCACTGGT---TGCTGGAGCAAAATATCGCGGTGAATTTGAAGAACG 1204 Query 48509 TATGGAAGGTATTATTAAAGAACT---TAAAAAACGAGAAAATGTAATTTTGTTCATTGA 48565 | || | ||| | | || ||||| ||| | || || || |||||||| ||||| Sbjct 1203 TCTGAAGGGTGTATTGAATGAACTGTCTAAGGAGGAAGGTAACGTTATTTTGTTTATTGA 1144 Query 48566 TGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAA 48625 |||| |||| | |||| | || || || ||||| ||| | |||||| ||| Sbjct 1143 TGAATTACACACTATGGTTGGCGCAGGAAA-AGCAGA--TGGGGCGATGGATGCCGTCAA 1087 Query 48626 TATCATGAAACCTGCACTTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGA 48685 ||| |||| || || || |||||||||| | | | || || || || ||| Sbjct 1086 TATGCTGAAGCCGGCTCTGGCACGTGGTGAATTGCACTGCGTAGGCGCGACTACGCTTGA 1027 Query 48686 GGAATATCGCCAGAACATTGAAAAAGATGCTGCATTT 48722 |||||||| ||| |||||||||||||||||||| || Sbjct 1026 TGAATATCGTCAGTACATTGAAAAAGATGCTGCACTT 990 >seq183268 Length=7428 Score = 93.3 bits (102), Expect = 9e-14 Identities = 175/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 48469 TAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAG 48528 ||| |||||| | |||| || ||||| || |||||||| | ||| ||||||| Sbjct 2895 TAATTGCTGGCGCTAAATTCCAAGGTGAGTTTGAAGAACGATTAAAAGCGGTTATTAACC 2836 Query 48529 AACTTAAAAAA-CGA--GAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGG 48585 || ||||||| | | | ||| | ||||| || ||||||||| ||||| | || | | Sbjct 2835 AAATTAAAAATTCTAATGGAAAAATTATTTTATTTATTGATGAACTACATTTAATTGTTG 2776 Query 48586 GTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTT 48645 |||||||| | | || | || || |||||| ||| | | ||||| | Sbjct 2775 GTGCTGGTAGAA-CACAA--GGTTCAATGGATGCTTCTAATTTACTAAAACCAATGTTAG 2719 Query 48646 CACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTG 48705 |||| ||||| | ||| ||| ||||| ||||| ||| |||||||| || |||||| Sbjct 2718 CACGCGGTGAACTACGTTGTATTGGTGCCACAACACTTGACGAATATCGTCAATACATTG 2659 Query 48706 AAAAAGATGCTGC 48718 |||||||||| || Sbjct 2658 AAAAAGATGCAGC 2646 >seq183156 Length=4409 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 179342 TGGCCGAGTGGTTTAAGGCACTGGTCTTGAAAACCAGCAATCCGAAAGGGTTCTAGAGTT 179401 ||||||||||| | ||||||| ||||||||||||| || || |||| |||||||||| Sbjct 3028 TGGCCGAGTGGCTGAAGGCACCGGTCTTGAAAACCGGCGATGGGAAACCATTCTAGAGTT 2969 Query 179402 CAAATCTCTATCCTTCCACCA--GATTT 179427 | |||||||| | ||||||| ||||| Sbjct 2968 CGAATCTCTACGCCTCCACCATCGATTT 2941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106390761161705